Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2 450 1e-121 >seq2 Length=4222574 Score = 450 bits (498), Expect = 1e-121 Identities = 1230/1861 (66%), Gaps = 32/1861 (2%) Strand=Plus/Minus Query 36793 ACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTT 36852 || ||||||| ||||| ||| | || | |||||| | | ||||||||| || || || Sbjct 4216023 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 4215964 Query 36853 AGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCT 36912 || || | |||| |||||||| || || | |||| | || |||| | | || Sbjct 4215963 AGACCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGGTTCAGCT 4215904 Query 36913 ATAT--ATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTT 36970 | | |||||| | || ||||||||||| ||||| || |||||||| || ||||||| Sbjct 4215903 ACGTGAATATTGAAA--GACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGCCATTT 4215846 Query 36971 CTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTG 37030 || | | |||| || |||||||| || |||||||| | | || | | | Sbjct 4215845 TTATAGTTGATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATTTCCTTCG 4215786 Query 37031 GTA---AATCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTCAT 37087 | | | || | || ||| || |||||| || | | | ||| ||| || || || | Sbjct 4215785 GAATTGATTCAATATTTTGTATTGAACCACGATTTGATATTATTTGATTTTTCATCTCGT 4215726 Query 37088 TATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAA 37145 || ||||| || | | || ||| || | | || ||| | ||||| || ||||| Sbjct 4215725 CATCCCACAAAT--CAAGTTCGGTTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAA 4215668 Query 37146 ATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATT 37205 || || || ||||||| |||||| || || || |||||| || || | |||||||| Sbjct 4215667 TTCGCCGGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATT 4215608 Query 37206 ATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCT 37265 || | | |||||| | |||||||| |||||||| || || | || | |||||| Sbjct 4215607 GTTGCCCATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCT 4215548 Query 37266 CAATCCATGT-GTATTAATTCTCTTTTTTA-GTTCATTCCAATCCCATAAATCTGTTGGG 37323 | |||||| | || || ||||||| | ||| ||| ||||| | ||||||||| Sbjct 4215547 GACACCATGTTGCGCTA--TCGATTTTTTAAGAACATCCCAGTCCCAAAGATCTGTTGGC 4215490 Query 37324 TTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTC 37383 || |||||||||||| || | ||| ||||| || ||||| | ||| ||| Sbjct 4215489 GATTTATTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTTCCAACATAAGTC 4215430 Query 37384 TCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATT 37443 ||||| ||||| | ||| ||||| ||| || || | ||| || || |||| ||||| Sbjct 4215429 TCATATGGTCCATCTCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTATATA 4215370 Query 37444 GTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAAT 37503 ||||||||||| || |||||| | ||| || | || ||| | | ||| | || | Sbjct 4215369 GTTTCGAAAATCTGCTGATTTAAAAGAAATGCATCATGACTTTCGTAAGAATACCGCATT 4215310 Query 37504 AATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTA 37563 ||||| ||| | || || || || || || || || || || || | || ||| Sbjct 4215309 AATATTAACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTT 4215250 Query 37564 GATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTA 37623 ||| | | |||| || || || ||||| ||||| |||||||| |||| ||||| Sbjct 4215249 GATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTC 4215190 Query 37624 ACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATA-AATACGTTATTATTAACA 37680 | ||||| || | | | | | ||| | || |||| || | || | ||| Sbjct 4215189 GTAACAATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACA 4215130 Query 37681 AATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAAT 37740 || || | | | ||| || | | |||||| ||||| | ||||||| | | || ||| Sbjct 4215129 AACATATTAAGTGCAATTGACGCCAAATTACACACAGCTATTTCATCT--GGTGCTGAAT 4215072 Query 37741 --TGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGG 37798 | | || ||||| || |||||||| || | || ||||| | ||| ||| ||| Sbjct 4215071 ACTCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGC 4215012 Query 37799 ATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCT 37858 |||| | ||||| ||||| ||| ||| || || || || || |||| ||||| | Sbjct 4215011 TTTTTCTGTTACACGAATCCTTAAATAACATGTAGGGTGTACCCGTCTCTACTTGAGATT 4214952 Query 37859 CGATAATAGATTTCCATAAACTTCTTGCTTTAACGA-TCGCTTTAAtttttttCTTTGTT 37917 ||||||| | ||| | | | || |||| | ||| || | | | ||| | Sbjct 4214951 CGATAATGGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCGCTCGTCCTTCTTG-T 4214893 Query 37918 TCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACAT 37977 || |||| ||||| | || | |||||| | ||||| ||||| | || |||||| Sbjct 4214892 TCATATTTGATATAAAGGTTTTCAAAATCTTCACCCCAAACATCTGGAAGGCCAGGACAT 4214833 Query 37978 TCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCA 38037 | |||||||||||| ||||| ||||||| ||| || |||| |||||| | |||| Sbjct 4214832 TTATGTGGACACATTAGTGACCAATCTTCATTGGCTTCAACACGTTTCATAAAAAGATCA 4214773 Query 38038 GGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTT 38097 || | ||| |||||| ||| | ||| | | || ||| || || || ||| ||| Sbjct 4214772 GGAATCCACAATGCAAAAAACAGATCGCGCGCCCGATGTTCCTCCTTTCCAGTATT-TTT 4214714 Query 38098 CTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGC 38156 ||||| | | ||| ||||| | ||| | |||||| || |||| ||||| | | ||| Sbjct 4214713 TTTAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGC 4214654 Query 38157 TCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAA 38216 ||| ||||||||| |||| ||||||| | ||| | | |||||| | | |||||| Sbjct 4214653 TCCAGGTCTTTTACCACCGCCCTGATCGACATAACGTGCCACATTATTAAAAACTCTTAA 4214594 Query 38217 CATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCG 38276 ||| ||||||| ||||| || | ||||| | || | || | || || |||||||| Sbjct 4214593 CATTGGTACTAATCCATTTGAAGTACCGTTCGTTCCACAAATTGATGTTCCTTTAGCTCG 4214534 Query 38277 TATATTACTTATC-GACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTT 38335 ||| | | | | || ||| || |||||||| ||||| || | |||||||| | Sbjct 4214533 AATA-CAGTGAACATTCAGTCCAATGCCACCTGCCGACTTTGAAATCATTGCGCATTGCT 4214475 Query 38336 TTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAG 38395 | | | ||| || ||||| || ||| | ||| | || | ||| || || Sbjct 4214474 CAACTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAGAGAAAGCATGAAG 4214415 Query 38396 ACATTTGAGGCAATGG--AGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCA 38453 ||| ||| || | || || | || ||| | || || |||||||| | || | Sbjct 4214414 ACAATTGTGG--ACGGTTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAA 4214357 Query 38454 TTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACC 38513 || || | |||| || ||||| | | || ||| ||||| |||| || ||||| Sbjct 4214356 ACGCTCAGATAGCAAATTGTAGGTTTCCACTGCAGAATCAATATCTTCGCCATGTATACC 4214297 Query 38514 TAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAG 38573 || || || | |||||||| ||| |||||||||||| |||||| ||| ||| || Sbjct 4214296 TATAGCAACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAG 4214237 Query 38574 TAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 | || || || | ||| || | |||||| || ||||| | |||| | ||| || Sbjct 4214236 CAAGTAAGACCGCTCAAGTGTCTTAAATCCAAAGTAGTTATATCCAAAATCACGATCATA 4214177 Query 38634 T 38634 | Sbjct 4214176 T 4214176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468477637122320