Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 540 1e-148 >seq2 Length=4222574 Score = 540 bits (598), Expect = 1e-148 Identities = 1271/1901 (67%), Gaps = 32/1901 (2%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 |||||||| || | | | || ||||| || || ||||| ||||| || || || ||| Sbjct 4216020 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 4215961 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || |||| |||||||| || |||| ||| |||| | || || |||| Sbjct 4215960 CCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGGTTCAGCTACG 4215901 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || ||||| | ||| ||||||||||| || |||||||| ||||| || ||||||||||| Sbjct 4215900 TGAATATTGAAAGACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTTATA 4215841 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 65077 | | || || ||| ||||| | |||||||| || || | | | |||| | | Sbjct 4215840 GTTGATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATTTCCTTCGGAATT 4215781 Query 65078 GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135 | || |||| || || || |||| || || || || ||| || ||||| |||| | Sbjct 4215780 GATTCAATATTTTGTATTGAACCACGATTTGATATTATTTGATTTTTCATCTCGTCATCC 4215721 Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195 || || | ||||||||| | | || | || | || |||||||||||||| || Sbjct 4215720 CACAAATCAAGTTCGGTTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCGCCG 4215661 Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255 |||||||||| | |||||||| || ||||| || || | |||||||| || ||| Sbjct 4215660 GACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTGTTGCCC 4215601 Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 65315 | ||||| ||||| ||||| || ||||| || || || | |||| |||||| | ||| Sbjct 4215600 ATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACACC- 4215542 Query 65316 TATGTTCTGATTTT-ATCTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 65373 ||||| | | | || ||||| || ||||| | ||||||||| | || | | Sbjct 4215541 -ATGTTGCGCTATCGATTTTTTAAGAACATCCCAGTCCCAAAGATCTGTTGG--CGATTT 4215485 Query 65374 NNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGT 65430 | || | ||| || || || | | || ||| ||||| || || | Sbjct 4215484 ATTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACT-TCCAACATAAGTCTCAT 4215426 Query 65431 ATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTT 65490 ||||||| || | | ||||| |||||| || || || | || || || || || |||| Sbjct 4215425 ATGGTCCATCTCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTT 4215366 Query 65491 CGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAA 65550 |||| |||| || ||||| | ||| || | || || | | ||| | | | Sbjct 4215365 CGAAAATCTGCTGATTTAAAAGAAATGCATCATGACTTTCGTAAGAATACCGCATTAATA 4215306 Query 65551 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 65610 | |||||||| || || ||||| || ||||| || ||||| | || | ||| || Sbjct 4215305 TTAACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATT 4215246 Query 65611 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAA 65670 ||| ||||||||| | ||| || ||||| ||||| || ||||| || | ||| | || Sbjct 4215245 TTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTAA 4215186 Query 65671 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTATTACAAACA 65727 | ||| || || || || || ||| ||| | | |||| | ||||||| Sbjct 4215185 CAATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACA 4215126 Query 65728 TGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTA 65787 | || | ||||| || |||| |||||| || |||| |||| | | | ||| | | Sbjct 4215125 TATTAAGTGCAATTGACGCCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAA 4215066 Query 65788 TTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTT 65847 ||| || ||||| |||||||| || || || ||||| | ||||||||| || || ||| Sbjct 4215065 CTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTC 4215006 Query 65848 TGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAA 65907 ||||||||| ||||||| | | ||| | || ||||| || || | |||||||| |||| Sbjct 4215005 TGTTACACGAATCCTTAAATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAA 4214946 Query 65908 TCGCTTTCCAGACGACTCGAGCCTTTATTA-TAGATTTGTATCTCTT--TTCTCTTTCGT 65964 | || ||| | | ||||||| || | | |||| | ||| | |||| ||| | Sbjct 4214945 TGGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCG---CTCGTCCTTCTTGTTCAT 4214889 Query 65965 ATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCAT 66024 || |||| | ||| || || || |||||||||| | |||||||||| || Sbjct 4214888 ATTTGATATAAAGGTTTTCAAAATCTTCACCCCAAACATCTGGAAGGCCAGGACATTTAT 4214829 Query 66025 CCGGACACATCAACGACCACTCTCCGTCATC--CTTCA-CTCGTTTCATAAAGAGATCAG 66081 |||||||| | ||||| ||| |||| ||||| | ||||||||||| ||||||| Sbjct 4214828 GTGGACACATTAGTGACCAATCT---TCATTGGCTTCAACACGTTTCATAAAAAGATCAG 4214772 Query 66082 GAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 66141 ||||||| | || | ||| | ||| | | | ||||||||| ||||| ||||| |||| Sbjct 4214771 GAATCCACAATGCAAAAAACAGATCGCGCGCCCGATGTTCCTCCTTTCCAGTATTTTTTT 4214712 Query 66142 TAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTC 66201 |||| || | || | | | ||| | ||||| || || ||||| || || | ||| Sbjct 4214711 TAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGCTC 4214652 Query 66202 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 66261 |||| | ||| || |||||||| | || | || |||||| ||||||| |||| Sbjct 4214651 CAGGTCTTTTACCACCGCCCTGATCGACATAACGTGCCACATTATTAAAAACTCTTAACA 4214592 Query 66262 TTGG-AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGA 66320 |||| | |||| ||||| || ||||| || || || | || | |||| | || ||| Sbjct 4214591 TTGGTACTAAT-CCATTTGAAGTACCGTTCGTTCCACAAATTGATGTTCCTTTAGCTCGA 4214533 Query 66321 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 66380 ||| || || || || || |||||| || || || | ||||||| | | Sbjct 4214532 ATACAGTGAACATTCAGTCCAATGCCACCTGCCGACTTTGAAATCATTGCGCATTGCTCA 4214473 Query 66381 AACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGA 66439 | | | | | || || || || |||| || || |||||| ||||| || ||| Sbjct 4214472 ACTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAG-AGAAAGCATGAAGA 4214414 Query 66440 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 66499 || ||| |||| | || | ||| ||| | || || || || || ||||| | Sbjct 4214413 CAATTGTGGACGGTTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACG 4214354 Query 66500 TTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTAC 66559 ||||| || | |||||| || || | || || || ||||| ||| || |||| Sbjct 4214353 CTCAGATAGCAAATTGTAGGTTTCCACTGCAGAATCAATATCTTCGCCATGTATACCTAT 4214294 Query 66560 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 66619 || |||||||||| || ||||| |||||||| | || || |||||||| | ||| Sbjct 4214293 AGCAACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAA 4214234 Query 66620 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 66679 ||| || || | || ||||| ||||| ||||| ||| ||| || || || || || Sbjct 4214233 GTAAGACCGCTCAAGTGTCTTAAATCCAAAGTAGTTATATCCAAAATCACGATCATATAT 4214174 Query 66680 AATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT 66720 |||| | ||||| | |||| || || ||||||| || Sbjct 4214173 AATAGCAGAGTTCAAGCGATCCGAATTATTTTTAACTATAT 4214133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658106546680520