Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq2 540 1e-148
>seq2
Length=4222574
Score = 540 bits (598), Expect = 1e-148
Identities = 1271/1901 (67%), Gaps = 32/1901 (2%)
Strand=Plus/Minus
Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898
|||||||| || | | | || ||||| || || ||||| ||||| || || || |||
Sbjct 4216020 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 4215961
Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958
|| |||| |||||||| || |||| ||| |||| | || || ||||
Sbjct 4215960 CCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGGTTCAGCTACG 4215901
Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018
|| ||||| | ||| ||||||||||| || |||||||| ||||| || |||||||||||
Sbjct 4215900 TGAATATTGAAAGACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTTATA 4215841
Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 65077
| | || || ||| ||||| | |||||||| || || | | | |||| | |
Sbjct 4215840 GTTGATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATTTCCTTCGGAATT 4215781
Query 65078 GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135
| || |||| || || || |||| || || || || ||| || ||||| |||| |
Sbjct 4215780 GATTCAATATTTTGTATTGAACCACGATTTGATATTATTTGATTTTTCATCTCGTCATCC 4215721
Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195
|| || | ||||||||| | | || | || | || |||||||||||||| ||
Sbjct 4215720 CACAAATCAAGTTCGGTTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCGCCG 4215661
Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255
|||||||||| | |||||||| || ||||| || || | |||||||| || |||
Sbjct 4215660 GACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTGTTGCCC 4215601
Query 65256 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 65315
| ||||| ||||| ||||| || ||||| || || || | |||| |||||| | |||
Sbjct 4215600 ATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACACC- 4215542
Query 65316 TATGTTCTGATTTT-ATCTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 65373
||||| | | | || ||||| || ||||| | ||||||||| | || | |
Sbjct 4215541 -ATGTTGCGCTATCGATTTTTTAAGAACATCCCAGTCCCAAAGATCTGTTGG--CGATTT 4215485
Query 65374 NNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGT 65430
| || | ||| || || || | | || ||| ||||| || || |
Sbjct 4215484 ATTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACT-TCCAACATAAGTCTCAT 4215426
Query 65431 ATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTT 65490
||||||| || | | ||||| |||||| || || || | || || || || || ||||
Sbjct 4215425 ATGGTCCATCTCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTT 4215366
Query 65491 CGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAA 65550
|||| |||| || ||||| | ||| || | || || | | ||| | | |
Sbjct 4215365 CGAAAATCTGCTGATTTAAAAGAAATGCATCATGACTTTCGTAAGAATACCGCATTAATA 4215306
Query 65551 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 65610
| |||||||| || || ||||| || ||||| || ||||| | || | ||| ||
Sbjct 4215305 TTAACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATT 4215246
Query 65611 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAA 65670
||| ||||||||| | ||| || ||||| ||||| || ||||| || | ||| | ||
Sbjct 4215245 TTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTAA 4215186
Query 65671 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTATTACAAACA 65727
| ||| || || || || || ||| ||| | | |||| | |||||||
Sbjct 4215185 CAATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACA 4215126
Query 65728 TGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTA 65787
| || | ||||| || |||| |||||| || |||| |||| | | | ||| | |
Sbjct 4215125 TATTAAGTGCAATTGACGCCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAA 4215066
Query 65788 TTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTT 65847
||| || ||||| |||||||| || || || ||||| | ||||||||| || || |||
Sbjct 4215065 CTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTC 4215006
Query 65848 TGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAA 65907
||||||||| ||||||| | | ||| | || ||||| || || | |||||||| ||||
Sbjct 4215005 TGTTACACGAATCCTTAAATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAA 4214946
Query 65908 TCGCTTTCCAGACGACTCGAGCCTTTATTA-TAGATTTGTATCTCTT--TTCTCTTTCGT 65964
| || ||| | | ||||||| || | | |||| | ||| | |||| ||| |
Sbjct 4214945 TGGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCG---CTCGTCCTTCTTGTTCAT 4214889
Query 65965 ATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCAT 66024
|| |||| | ||| || || || |||||||||| | |||||||||| ||
Sbjct 4214888 ATTTGATATAAAGGTTTTCAAAATCTTCACCCCAAACATCTGGAAGGCCAGGACATTTAT 4214829
Query 66025 CCGGACACATCAACGACCACTCTCCGTCATC--CTTCA-CTCGTTTCATAAAGAGATCAG 66081
|||||||| | ||||| ||| |||| ||||| | ||||||||||| |||||||
Sbjct 4214828 GTGGACACATTAGTGACCAATCT---TCATTGGCTTCAACACGTTTCATAAAAAGATCAG 4214772
Query 66082 GAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 66141
||||||| | || | ||| | ||| | | | ||||||||| ||||| ||||| ||||
Sbjct 4214771 GAATCCACAATGCAAAAAACAGATCGCGCGCCCGATGTTCCTCCTTTCCAGTATTTTTTT 4214712
Query 66142 TAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTC 66201
|||| || | || | | | ||| | ||||| || || ||||| || || | |||
Sbjct 4214711 TAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGCTC 4214652
Query 66202 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 66261
|||| | ||| || |||||||| | || | || |||||| ||||||| ||||
Sbjct 4214651 CAGGTCTTTTACCACCGCCCTGATCGACATAACGTGCCACATTATTAAAAACTCTTAACA 4214592
Query 66262 TTGG-AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGA 66320
|||| | |||| ||||| || ||||| || || || | || | |||| | || |||
Sbjct 4214591 TTGGTACTAAT-CCATTTGAAGTACCGTTCGTTCCACAAATTGATGTTCCTTTAGCTCGA 4214533
Query 66321 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 66380
||| || || || || || |||||| || || || | ||||||| | |
Sbjct 4214532 ATACAGTGAACATTCAGTCCAATGCCACCTGCCGACTTTGAAATCATTGCGCATTGCTCA 4214473
Query 66381 AACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGA 66439
| | | | | || || || || |||| || || |||||| ||||| || |||
Sbjct 4214472 ACTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAG-AGAAAGCATGAAGA 4214414
Query 66440 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 66499
|| ||| |||| | || | ||| ||| | || || || || || ||||| |
Sbjct 4214413 CAATTGTGGACGGTTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACG 4214354
Query 66500 TTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTAC 66559
||||| || | |||||| || || | || || || ||||| ||| || ||||
Sbjct 4214353 CTCAGATAGCAAATTGTAGGTTTCCACTGCAGAATCAATATCTTCGCCATGTATACCTAT 4214294
Query 66560 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 66619
|| |||||||||| || ||||| |||||||| | || || |||||||| | |||
Sbjct 4214293 AGCAACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAA 4214234
Query 66620 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 66679
||| || || | || ||||| ||||| ||||| ||| ||| || || || || ||
Sbjct 4214233 GTAAGACCGCTCAAGTGTCTTAAATCCAAAGTAGTTATATCCAAAATCACGATCATATAT 4214174
Query 66680 AATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT 66720
|||| | ||||| | |||| || || ||||||| ||
Sbjct 4214173 AATAGCAGAGTTCAAGCGATCCGAATTATTTTTAACTATAT 4214133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658106546680520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |