Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 >seq2 Length=4222574 Score = 114 bits (126), Expect = 1e-20 Identities = 196/285 (69%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 20921 CAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTC 20980 ||||||||||| || || || || || ||||| || ||||||| || || || || || Sbjct 2650270 CAGCAGGGGATTCACATGATTATTATAGACGTGAGCATCACCCAGCGTATGGACGAAATC 2650329 Query 20981 TCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGAT 21040 || || ||| ||||| || |||||||||| || |||| | ||| || |||||| Sbjct 2650330 GCCGGGCTTCAAACCCGTCACATGAGCGATCATGTAGGTCAACAAGGCATACGAGGCGAT 2650389 Query 21041 GTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTC 21100 || || || || || || |||||||||||| | ||| ||||| |||||||||| || Sbjct 2650390 ATTGAAGGGTACTCCCAGACCCATGTCGGCGCTGCGCTGATACAGTTGGCAGGACAATTC 2650449 Query 21101 CCCCCGAGCC------ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCG 21154 || || | | || || || || || ||| || || || | ||||| | Sbjct 2650450 ACCACGCGACTGCGATACATAGAATTGGACCAGGCAGTGGCATGGCGGTAATGCCATTTG 2650509 Query 21155 CGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATC 21199 | | |||| || ||||| ||| |||| | |||||| ||||| Sbjct 2650510 GGGTATGTCCAAAGGATTCCAGGCGGACATTATGATGCGACGATC 2650554 Score = 114 bits (126), Expect = 1e-20 Identities = 196/285 (69%), Gaps = 6/285 (2%) Strand=Plus/Plus Query 20921 CAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTC 20980 ||||||||||| || || || || || ||||| || ||||||| || || || || || Sbjct 2651467 CAGCAGGGGATTCACATGATTATTATAGACGTGAGCATCACCCAGCGTATGGACGAAATC 2651526 Query 20981 TCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGAT 21040 || || ||| ||||| || |||||||||| || |||| | ||| || |||||| Sbjct 2651527 GCCGGGCTTCAAACCCGTCACATGAGCGATCATGTAGGTCAACAAGGCATACGAGGCGAT 2651586 Query 21041 GTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTC 21100 || || || || || || |||||||||||| | ||| ||||| |||||||||| || Sbjct 2651587 ATTGAAGGGTACTCCCAGACCCATGTCGGCGCTGCGCTGATACAGTTGGCAGGACAATTC 2651646 Query 21101 CCCCCGAGCC------ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCG 21154 || || | | || || || || || ||| || || || | ||||| | Sbjct 2651647 ACCACGCGACTGCGATACATAGAATTGGACCAGGCAGTGGCATGGCGGTAATGCCATTTG 2651706 Query 21155 CGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATC 21199 | | |||| || ||||| ||| |||| | |||||| ||||| Sbjct 2651707 GGGTATGTCCAAAGGATTCCAGGCGGACATTATGATGCGACGATC 2651751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427734015523440