Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2 125 7e-24 seq3 118 1e-21 >seq2 Length=4222574 Score = 125 bits (138), Expect = 7e-24 Identities = 491/768 (64%), Gaps = 13/768 (2%) Strand=Plus/Minus Query 153046 CGATTAGATCATCGACCAAGTAGCGGTTGACAACTTGAAATTCGCCCGACAATACACGTC 153105 || ||| |||| || |||| |||| || |||||||||||||| |||||||| |||| Sbjct 4215707 CGGTTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCGCCGGACAATACTCGTC 4215648 Query 153106 TCAAAAACAAATTACTGTGAA----ACGGTTCAAACGACTCGTTGTTATTGAGTATTTGT 153161 | | | || |||| | || || |||||||| ||||| | ||||||| Sbjct 4215647 TTGTGTAAATGTT----TGAAGTATAAGGCTCGAACGACTCATTGTTGCCCATTATTTGT 4215592 Query 153162 GCGGTCGTGGCCGTCGGCATGTACGCCACAAGCAACGAATTACGTAATCCGTGTTTTTGT 153221 || || | || || |||||| || || || || ||||| | | || |||| | Sbjct 4215591 GCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACACCATGTTGCGCT 4215532 Query 153222 ATGTTCATCTTCAATTGTGACCAGTCCCATAACGAAGTAGGTATCGCATTCCACAAATCG 153281 || | || | ||||||||| | || || |||||||| ||| Sbjct 4215531 ATCGATTTTTTAAGAACATCCCAGTCCCAAAGATCTGTTGGCGATTTATTCCACATATCA 4215472 Query 153282 TATTGCAATATCCCTTGGCTAGCTTTGCTACCGGCAAACGTGCTATACGGCTCA-CTGTC 153340 || ||||| || |||| ||| || || || || | || ||| || || || | Sbjct 4215471 TACTGCAAAATTCCTTTGCTTACTGGACTTCCAACATAAGTCTCATATGGTCCATCTCTT 4215412 Query 153341 AGACGCCAGTTTCAAACTGGCATCGAGCGCGGCATGATACACAGTTTCGGAAATCTGTTT 153400 || || | || | ||||| || || || ||| || | ||||||| ||||||| | Sbjct 4215411 TGA-GCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTTCGAAAATCTGCTG 4215353 Query 153401 GTTCAGTAAAACGGCAGCATCGCTCACGTACGGTATGCGCAACATGACAAATGCATCGGC 153460 || | | || ||| ||| || |||| | |||| | | || || || || Sbjct 4215352 ATTTAAAAGAAATGCATCATGACTTTCGTAAGAATACCGCATTAATATTAACGCGTCCGC 4215293 Query 153461 CAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttttttGCAGCTTC 153520 || ||||| | ||||| || || ||||| ||||| | ||| |||||||| || || Sbjct 4215292 AAACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATTTTTTAGCTTCTGG 4215233 Query 153521 AACAGGATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACGACATGTTTCACCAC 153580 | ||| ||| |||| || || ||||| ||||| | || ||| ||| || Sbjct 4215232 CAAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTAACAATTTTAGTTAC 4215173 Query 153581 AGAATGCAACAGTTGAAAATCAAACG---TTCCATTAATGATATATTTGTTGACGGCAAT 153637 | | | || ||| ||| ||| || ||| | | | | | || | ||||| Sbjct 4215172 TTCTTTAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACATATTAAGTGCAAT 4215113 Query 153638 CGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACA 153697 |||||||| || || || || |||| || || || |||| | |||||||| | || Sbjct 4215112 TGACGCCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAACTATTTCTGTGCA 4215053 Query 153698 CAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTC 153757 || ||| ||||||||||| || ||| ||| |||||||| | |||||| | || Sbjct 4215052 CAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACGAATC 4214993 Query 153758 CTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAAT 153805 ||| ||| |||||| ||||| || || || ||||| ||| ||||| Sbjct 4214992 CTTAAATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAAT 4214945 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | |||||||| | || ||||| || |||||||| || ||| Sbjct 180296 GCCACCACGCAGACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGA 180237 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | |||| || | || || ||||| || || ||| |||||||||| |||||||| || | Sbjct 180236 TAGAGTGCGTCCA-TCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTG 180178 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || ||||||||||| ||| || || | | || | ||||| | |||||| | Sbjct 180177 GGATCCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGA 180118 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | ||||||||||| | ||||| ||||| |||||||| Sbjct 180117 CCTCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCAT 180069 >seq3 Length=21835025 Score = 118 bits (130), Expect = 1e-21 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| || |||| |||||||| || ||||| || |||||| Sbjct 1955487 GCCACCACGCAGACGTAGAACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGA 1955428 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||| || || || || || |||||||||| |||||||| || || Sbjct 1955427 CAAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 1955368 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACTG-TGTCGGTGGGCTCC 139714 |||||||| ||||| ||| | || | || | |||| || || | |||| |||||| Sbjct 1955367 AATGCCTTCCTTGTCC-TGAATCTTAGCCTTCAC-GTTCTCAATGGTATCGGATGGCTCC 1955310 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | || | |||||||| |||| || || ||||| ||||||||| Sbjct 1955309 ACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 1955259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496014064957600