Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq2 125 7e-24
seq3 118 1e-21
>seq2
Length=4222574
Score = 125 bits (138), Expect = 7e-24
Identities = 491/768 (64%), Gaps = 13/768 (2%)
Strand=Plus/Minus
Query 153046 CGATTAGATCATCGACCAAGTAGCGGTTGACAACTTGAAATTCGCCCGACAATACACGTC 153105
|| ||| |||| || |||| |||| || |||||||||||||| |||||||| ||||
Sbjct 4215707 CGGTTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCGCCGGACAATACTCGTC 4215648
Query 153106 TCAAAAACAAATTACTGTGAA----ACGGTTCAAACGACTCGTTGTTATTGAGTATTTGT 153161
| | | || |||| | || || |||||||| ||||| | |||||||
Sbjct 4215647 TTGTGTAAATGTT----TGAAGTATAAGGCTCGAACGACTCATTGTTGCCCATTATTTGT 4215592
Query 153162 GCGGTCGTGGCCGTCGGCATGTACGCCACAAGCAACGAATTACGTAATCCGTGTTTTTGT 153221
|| || | || || |||||| || || || || ||||| | | || |||| |
Sbjct 4215591 GCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACACCATGTTGCGCT 4215532
Query 153222 ATGTTCATCTTCAATTGTGACCAGTCCCATAACGAAGTAGGTATCGCATTCCACAAATCG 153281
|| | || | ||||||||| | || || |||||||| |||
Sbjct 4215531 ATCGATTTTTTAAGAACATCCCAGTCCCAAAGATCTGTTGGCGATTTATTCCACATATCA 4215472
Query 153282 TATTGCAATATCCCTTGGCTAGCTTTGCTACCGGCAAACGTGCTATACGGCTCA-CTGTC 153340
|| ||||| || |||| ||| || || || || | || ||| || || || |
Sbjct 4215471 TACTGCAAAATTCCTTTGCTTACTGGACTTCCAACATAAGTCTCATATGGTCCATCTCTT 4215412
Query 153341 AGACGCCAGTTTCAAACTGGCATCGAGCGCGGCATGATACACAGTTTCGGAAATCTGTTT 153400
|| || | || | ||||| || || || ||| || | ||||||| ||||||| |
Sbjct 4215411 TGA-GCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTTCGAAAATCTGCTG 4215353
Query 153401 GTTCAGTAAAACGGCAGCATCGCTCACGTACGGTATGCGCAACATGACAAATGCATCGGC 153460
|| | | || ||| ||| || |||| | |||| | | || || || ||
Sbjct 4215352 ATTTAAAAGAAATGCATCATGACTTTCGTAAGAATACCGCATTAATATTAACGCGTCCGC 4215293
Query 153461 CAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttttttGCAGCTTC 153520
|| ||||| | ||||| || || ||||| ||||| | ||| |||||||| || ||
Sbjct 4215292 AAACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATTTTTTAGCTTCTGG 4215233
Query 153521 AACAGGATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACGACATGTTTCACCAC 153580
| ||| ||| |||| || || ||||| ||||| | || ||| ||| ||
Sbjct 4215232 CAAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTAACAATTTTAGTTAC 4215173
Query 153581 AGAATGCAACAGTTGAAAATCAAACG---TTCCATTAATGATATATTTGTTGACGGCAAT 153637
| | | || ||| ||| ||| || ||| | | | | | || | |||||
Sbjct 4215172 TTCTTTAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACATATTAAGTGCAAT 4215113
Query 153638 CGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTACTATTTCCGCACA 153697
|||||||| || || || || |||| || || || |||| | |||||||| | ||
Sbjct 4215112 TGACGCCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAACTATTTCTGTGCA 4215053
Query 153698 CAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGCGGTTACAAGCGTC 153757
|| ||| ||||||||||| || ||| ||| |||||||| | |||||| | ||
Sbjct 4215052 CAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACGAATC 4214993
Query 153758 CTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAAT 153805
||| ||| |||||| ||||| || || || ||||| ||| |||||
Sbjct 4214992 CTTAAATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAAT 4214945
Score = 122 bits (134), Expect = 9e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | |||||||| | || ||||| || |||||||| || |||
Sbjct 180296 GCCACCACGCAGACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGA 180237
Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655
| |||| || | || || ||||| || || ||| |||||||||| |||||||| || |
Sbjct 180236 TAGAGTGCGTCCA-TCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTG 180178
Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
| || ||||||||||| ||| || || | | || | ||||| | |||||| |
Sbjct 180177 GGATCCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGA 180118
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| | ||| | ||||||||||| | ||||| ||||| ||||||||
Sbjct 180117 CCTCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCAT 180069
>seq3
Length=21835025
Score = 118 bits (130), Expect = 1e-21
Identities = 168/231 (73%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || || | ||| | ||| || |||| |||||||| || ||||| || ||||||
Sbjct 1955487 GCCACCACGCAGACGTAGAACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGA 1955428
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| |||| ||||| || || || || || |||||||||| |||||||| || ||
Sbjct 1955427 CAAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 1955368
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACTG-TGTCGGTGGGCTCC 139714
|||||||| ||||| ||| | || | || | |||| || || | |||| ||||||
Sbjct 1955367 AATGCCTTCCTTGTCC-TGAATCTTAGCCTTCAC-GTTCTCAATGGTATCGGATGGCTCC 1955310
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||| | || | |||||||| |||| || || ||||| |||||||||
Sbjct 1955309 ACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 1955259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496014064957600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |