Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 569 3e-157 seq4 255 8e-63 >seq2 Length=4222574 Score = 569 bits (630), Expect = 3e-157 Identities = 1278/1900 (67%), Gaps = 30/1900 (2%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||| || | | | || ||||| || || ||||| ||||| || || || ||| Sbjct 4216020 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 4215961 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || |||| || ||||| || |||| ||| |||| | || || |||| Sbjct 4215960 CCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGGTTCAGCTACG 4215901 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || ||||| | ||| ||||||||||| || |||||||| ||||| || ||||||||||| Sbjct 4215900 TGAATATTGAAAGACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTTATA 4215841 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 78956 | | || || ||| ||||| | |||||||| || || | | | |||| | | Sbjct 4215840 GTTGATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATTTCCTTCGGAATT 4215781 Query 78957 GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 | || |||| || || || |||| || || || || ||| || ||||| |||| | Sbjct 4215780 GATTCAATATTTTGTATTGAACCACGATTTGATATTATTTGATTTTTCATCTCGTCATCC 4215721 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 || || | ||||||||| | | || | || | || |||||||||||||| || Sbjct 4215720 CACAAATCAAGTTCGGTTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCGCCG 4215661 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 |||||||||| | |||||||| || ||||| || || | ||| ||||| || ||| Sbjct 4215660 GACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTGTTGCCC 4215601 Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194 | ||||| ||||| ||||| || ||||| || || || | |||| |||||| | ||| Sbjct 4215600 ATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACACC- 4215542 Query 79195 TATGATCTGATTTT-ATCTTTTA-GAGATTCCCAATCCCAAAGATCAGACGGGACAACAT 79252 ||| | | | | || ||||| || ||||| ||||||||||| | || || Sbjct 4215541 -ATGTTGCGCTATCGATTTTTTAAGAACATCCCAGTCCCAAAGATCTGTTGGCGATTTAT 4215483 Query 79253 TCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAG 79312 |||| | |||||| || | ||| || || || | ||| || || ||||| | Sbjct 4215482 TCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTTCCAACATAAGTCTCATATG 4215423 Query 79313 GTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGA 79372 |||| || ||| ||||||||||| || || || | ||||| || || || ||||||| Sbjct 4215422 GTCCATCTCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTTCGA 4215363 Query 79373 AAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAA 79432 |||||| || ||| | | ||| || | || || | | ||| | | || | Sbjct 4215362 AAATCTGCTGATTTAAAAGAAATGCATCATGACTTTCGTAAGAATACCGCATTAATATTA 4215303 Query 79433 ACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTT 79492 ||||||| || || ||||| || ||||| || ||||| | || | ||| || ||| Sbjct 4215302 ACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATTTTT 4215243 Query 79493 CAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT---CCTGACTA 79549 ||||||||| | ||| || ||||| ||||| || ||||| || | || | | || | Sbjct 4215242 TAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTAACAA 4215183 Query 79550 TTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCGTCCATCTATTACAAACA 79606 || || || || || || || ||| ||| | | | ||| | ||||||| Sbjct 4215182 TT---TTAGTTACTTCTTTAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACA 4215126 Query 79607 TGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTA 79666 | || | || | || |||| |||||| || |||| |||| | | | ||| | | Sbjct 4215125 TATTAAGTGCAATTGACGCCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAA 4215066 Query 79667 TTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTT 79726 |||||| ||||| || ||||| || || || ||||| | ||||||||| || || ||| Sbjct 4215065 CTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTC 4215006 Query 79727 TGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAA 79786 ||||||||| ||||||| | | ||| | || ||||| || || | |||||||| |||| Sbjct 4215005 TGTTACACGAATCCTTAAATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAA 4214946 Query 79787 TCGCTTTCCAGACGACTCGAGCCTTTATTA-TAGACTTGTATCTCTT--TTCTCTTTCGT 79843 | || ||| | | ||||||| || | | || | | ||| | |||| ||| | Sbjct 4214945 TGGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCG---CTCGTCCTTCTTGTTCAT 4214889 Query 79844 ATTGTGTATATAATCGTT--CGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTC 79901 ||| || |||||| ||| | || || || ||||||||||| | |||||||||| Sbjct 4214888 ATT-TG-ATATAAAGGTTTTCAAAATCTTCACCCCAAACATCTGGAAGGCCAGGACATTT 4214831 Query 79902 GTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGG 79961 | |||||||| | ||||| ||| ||| | | || ||||||||||| |||||||| Sbjct 4214830 ATGTGGACACATTAGTGACCAATCTTCATTGGCTTCAACACGTTTCATAAAAAGATCAGG 4214771 Query 79962 AATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTT 80021 |||||| | || | ||| ||||| | | | ||| ||||| ||||| ||||| ||||| Sbjct 4214770 AATCCACAATGCAAAAAACAGATCGCGCGCCCGATGTTCCTCCTTTCCAGTATTTTTTTT 4214711 Query 80022 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 80081 ||| || | || | | | ||| || ||||| || || ||||| || || | |||| Sbjct 4214710 AAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGCTCC 4214651 Query 80082 CGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 80141 |||| ||| || |||||||| | || | || |||||| ||||||| ||||| Sbjct 4214650 AGGTCTTTTACCACCGCCCTGATCGACATAACGTGCCACATTATTAAAAACTCTTAACAT 4214591 Query 80142 TGG-AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAA 80200 ||| | |||| ||||| || ||||| || || || | || | |||| | || |||| Sbjct 4214590 TGGTACTAAT-CCATTTGAAGTACCGTTCGTTCCACAAATTGATGTTCCTTTAGCTCGAA 4214532 Query 80201 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 80260 || || || || || || |||||| || || || | ||||||| | | | Sbjct 4214531 TACAGTGAACATTCAGTCCAATGCCACCTGCCGACTTTGAAATCATTGCGCATTGCTCAA 4214472 Query 80261 ACGTATCATAGATGCCCTCTATGCTATCA-TCAATCATGTTAAGTAGAAAACAGCTAGAC 80319 | | | | || || || || |||| || | |||||| ||||| || |||| Sbjct 4214471 CTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAG-AGAAAGCATGAAGAC 4214413 Query 80320 ATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 80379 | ||| |||| | || | ||| ||| | || || || || || ||||| | Sbjct 4214412 AATTGTGGACGGTTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGC 4214353 Query 80380 TCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACC 80439 ||||| || | |||||| || || | || || || ||||| ||| || |||| Sbjct 4214352 TCAGATAGCAAATTGTAGGTTTCCACTGCAGAATCAATATCTTCGCCATGTATACCTATA 4214293 Query 80440 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 80499 || |||||||||| || ||||| |||||||| | || || ||||||||| | |||| Sbjct 4214292 GCAACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAG 4214233 Query 80500 TAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 80559 ||||| || | || ||||| ||||| ||||| ||| ||| || || || || ||| Sbjct 4214232 TAAGACCGCTCAAGTGTCTTAAATCCAAAGTAGTTATATCCAAAATCACGATCATATATA 4214173 Query 80560 ATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT 80599 ||| | ||||| | |||| || || ||||||| || Sbjct 4214172 ATAGCAGAGTTCAAGCGATCCGAATTATTTTTAACTATAT 4214133 >seq4 Length=22154029 Score = 255 bits (282), Expect = 8e-63 Identities = 568/844 (67%), Gaps = 9/844 (1%) Strand=Plus/Plus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||| |||| ||||| ||| ||||| || || || |||||||| |||||||| || Sbjct 3240309 GACGTAACGCCCATACGTTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCA 3240368 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773 |||| || || | |||||||| || ||||| | ||| || ||||| || Sbjct 3240369 TCCAGCGAGATCATCTCCATGAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACA 3240428 Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAA 49833 || | ||| | || | |||||| |||||||| |||||| ||||| | ||||| Sbjct 3240429 CCGAGTTCCACCAGCAGACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAA 3240488 Query 49834 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 49893 ||||| || || | || || || ||||| | || ||||| ||||| ||||||| || Sbjct 3240489 TTCATGCCAATCAAATTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACA 3240548 Query 49894 GCATCTGTTATAATA--GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAA 49951 ||||| | ||||| ||| ||| | | | | || | |||| ||||| | Sbjct 3240549 GCATCCGAGATAATCTCGATGATACGCTCCCGGC--TGGGCCGTTGCACCAAATGCCGGA 3240606 Query 49952 ACATCAA-ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||||| ||| || || || || |||| |||||||| | || | || ||||| Sbjct 3240607 ACATCATGACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAG 3240665 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 ||||| || || ||||| || |||||||| || |||||||| || || ||||| || Sbjct 3240666 AACGTCAGACCTGGCATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCG 3240725 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACT-GGCGCT 50129 ||||||||||| || || || ||||| || | || |||||| ||| | | | ||| Sbjct 3240726 CTGAAGAAGATTCCCTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCC 3240785 Query 50130 GTC-ATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 || ||| ||||| | |||||||| ||||| || ||| ||||| ||||| Sbjct 3240786 TTCGATGAAATCCAAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCA 3240845 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 |||||||| || ||||| | ||| | ||| ||| ||| |||||||||| | Sbjct 3240846 ATGGCATTGAACAGATAATCCCTTTGCTGTGGATCCCTAATATATGTATCGATCAGCACG 3240905 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 || ||||| ||||| || | || || ||||| || ||||| || |||||||| | ||| Sbjct 3240906 CTGTACATCTCCGAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCT 3240965 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 ||||| || ||||| || | || || || | | ||| ||||| || || || || Sbjct 3240966 TCGGTTATTTGCACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCG 3241025 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427 ||| ||||| || || | ||||| ||||| || ||||| |||| Sbjct 3241026 GAGGCGGCAAAGAAGGCGAGCACATGCGAGATAAAGTGACGCTCGTTATCAGTTAAACGT 3241085 Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487 ||| || | ||| || || | ||| || || ||||| ||||| ||||| ||||| Sbjct 3241086 GCCCAGTCCGCCAAATCCTTGGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGCCTCG 3241145 Query 50488 GCCT 50491 |||| Sbjct 3241146 GCCT 3241149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718196497266920