Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4 159 3e-34 >seq4 Length=22154029 Score = 159 bits (176), Expect = 3e-34 Identities = 566/875 (65%), Gaps = 12/875 (1%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 || ||||| |||| | || ||| ||||| || || || |||||||||| | Sbjct 3240267 TAGAAATCCGCATCAAGTGTAAACACATTGTCTAGCCGATTCGACGTAACGCCCATACGT 3240326 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 |||||||| | |||| | || || || ||||||||||| || ||||| || || | ||| Sbjct 3240327 TGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCATCCAGCGAGATCATCTCC 3240386 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 || || |||||||| | | | | | ||| || ||| ||||| | || | Sbjct 3240387 ATGAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACCAGCAGA 3240446 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 | ||| || | ||| ||||||||||| ||||| || |||||||||| || || | || Sbjct 3240447 CGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAATTCATGCCAATCAAATTG 3240506 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 || || | || || | ||| |||| || || | ||||| || ||||| Sbjct 3240507 ACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCCGAGATAATCTCG 3240566 Query 13824 GTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTA-AACACGCAAAATC 13882 | ||| ||| || | | | ||| || || | ||| ||||| || Sbjct 3240567 ATGATACGCTCCCGGCTGGGCCGTTGCACCAAATGCCGGAACATCATGACA-GCAAAGTC 3240625 Query 13883 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13942 |||||| | |||||| || | || | || || || || || | |||||||||| Sbjct 3240626 ACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGTCAGACCTGGCATCAG 3240685 Query 13943 TCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAAC 14002 || || || || | |||||| || | ||||| ||| ||||| |||||||| || Sbjct 3240686 ACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAAGAAGATTCCCTCCAC 3240745 Query 14003 TGCAGCAAACGCTATTAATCGTTCTCCAAA---CGATGCTTTTTTGTTCGATATCCATTT 14059 ||||||||||| || | || || ||||| || || || | | || ||||| Sbjct 3240746 GGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGC--CTTCGAT-GAAATCCAAGA 3240802 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT- 14118 ||||| |||| ||| || | | |||||||||||| ||||| || | || Sbjct 3240803 GAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAGATA 3240862 Query 14119 ATTCCTTCTCTTTAG-TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14177 || |||| || | | | | | ||| |||||||| || || | ||| ||||| || ||| Sbjct 3240863 ATCCCTTTGCTGTGGATCCCT--AATATATGTATCGATCAGCACGCTGTACATCTCCGAG 3240920 Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACT 14237 || | || ||||| || || ||||| ||||| || || | |||||| | ||| || Sbjct 3240921 TGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGCACC 3240980 Query 14238 TCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14297 ||| | || | ||| ||| ||| |||||||| || ||||| || ||||| || Sbjct 3240981 TCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCGGAGGCGGCAAAGAAG 3241040 Query 14298 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAA 14357 || | | | ||||||| |||| | || | | | ||| || | ||| Sbjct 3241041 GCGAGCACATGCGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCCGCCAAA 3241100 Query 14358 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392 ||||| || ||||| || || || || ||||| || Sbjct 3241101 TCCTTGGAGAGATCCACCTCCTCCACAGTCCAGAA 3241135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479679709380200