Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq4 159 3e-34
>seq4
Length=22154029
Score = 159 bits (176), Expect = 3e-34
Identities = 566/875 (65%), Gaps = 12/875 (1%)
Strand=Plus/Plus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583
|| ||||| |||| | || ||| ||||| || || || |||||||||| |
Sbjct 3240267 TAGAAATCCGCATCAAGTGTAAACACATTGTCTAGCCGATTCGACGTAACGCCCATACGT 3240326
Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643
|||||||| | |||| | || || || ||||||||||| || ||||| || || | |||
Sbjct 3240327 TGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCATCCAGCGAGATCATCTCC 3240386
Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703
|| || |||||||| | | | | | ||| || ||| ||||| | || |
Sbjct 3240387 ATGAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACCAGCAGA 3240446
Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763
| ||| || | ||| ||||||||||| ||||| || |||||||||| || || | ||
Sbjct 3240447 CGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAATTCATGCCAATCAAATTG 3240506
Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823
|| || | || || | ||| |||| || || | ||||| || |||||
Sbjct 3240507 ACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCCGAGATAATCTCG 3240566
Query 13824 GTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTA-AACACGCAAAATC 13882
| ||| ||| || | | | ||| || || | ||| ||||| ||
Sbjct 3240567 ATGATACGCTCCCGGCTGGGCCGTTGCACCAAATGCCGGAACATCATGACA-GCAAAGTC 3240625
Query 13883 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13942
|||||| | |||||| || | || | || || || || || | ||||||||||
Sbjct 3240626 ACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGTCAGACCTGGCATCAG 3240685
Query 13943 TCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAAC 14002
|| || || || | |||||| || | ||||| ||| ||||| |||||||| ||
Sbjct 3240686 ACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAAGAAGATTCCCTCCAC 3240745
Query 14003 TGCAGCAAACGCTATTAATCGTTCTCCAAA---CGATGCTTTTTTGTTCGATATCCATTT 14059
||||||||||| || | || || ||||| || || || | | || |||||
Sbjct 3240746 GGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGC--CTTCGAT-GAAATCCAAGA 3240802
Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT- 14118
||||| |||| ||| || | | |||||||||||| ||||| || | ||
Sbjct 3240803 GAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAGATA 3240862
Query 14119 ATTCCTTCTCTTTAG-TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14177
|| |||| || | | | | | ||| |||||||| || || | ||| ||||| || |||
Sbjct 3240863 ATCCCTTTGCTGTGGATCCCT--AATATATGTATCGATCAGCACGCTGTACATCTCCGAG 3240920
Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACT 14237
|| | || ||||| || || ||||| ||||| || || | |||||| | ||| ||
Sbjct 3240921 TGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGCACC 3240980
Query 14238 TCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14297
||| | || | ||| ||| ||| |||||||| || ||||| || ||||| ||
Sbjct 3240981 TCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCGGAGGCGGCAAAGAAG 3241040
Query 14298 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAA 14357
|| | | | ||||||| |||| | || | | | ||| || | |||
Sbjct 3241041 GCGAGCACATGCGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCCGCCAAA 3241100
Query 14358 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14392
||||| || ||||| || || || || ||||| ||
Sbjct 3241101 TCCTTGGAGAGATCCACCTCCTCCACAGTCCAGAA 3241135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479679709380200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |