Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq4 163 3e-35 >seq4 Length=22154029 Score = 163 bits (180), Expect = 3e-35 Identities = 563/872 (65%), Gaps = 6/872 (1%) Strand=Plus/Plus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 || ||||| |||| | || ||| ||||| || || || |||||||||| | Sbjct 3240267 TAGAAATCCGCATCAAGTGTAAACACATTGTCTAGCCGATTCGACGTAACGCCCATACGT 3240326 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 |||||||| | |||| | || || |||||||||||||| || ||||| || || | ||| Sbjct 3240327 TGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCATCCAGCGAGATCATCTCC 3240386 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 || || ||||||||| | | | | | ||| || ||| ||||| | | | Sbjct 3240387 ATGAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACCAGCAGA 3240446 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13551 | ||| || | ||| ||||||||||| ||||| || |||||||||| || || | || Sbjct 3240447 CGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAATTCATGCCAATCAAATTG 3240506 Query 13552 ACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 13611 || || | || || | ||| |||| || || | ||||| || ||||| Sbjct 3240507 ACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCCGAGATAATCTCG 3240566 Query 13612 TTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTA-AACACGCAAAATC 13670 | ||| || || | | | ||| || || | ||| ||||| || Sbjct 3240567 ATGATACGCTCCCGGCTGGGCCGTTGCACCAAATGCCGGAACATCATGACA-GCAAAGTC 3240625 Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730 |||||| | |||||| || | || | || || || || || | |||||||||| Sbjct 3240626 ACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGTCAGACCTGGCATCAG 3240685 Query 13731 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 13790 || || || || | |||||| || | || || |||| ||||| |||||||| || Sbjct 3240686 ACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAAGAAGATTCCCTCCAC 3240745 Query 13791 TGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCT 13850 ||||||||||| || | || || ||||| || || ||| ||||| Sbjct 3240746 GGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCCTTCGATGAAATCCAAGAGAG 3240805 Query 13851 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAAT-GTT 13909 ||||| |||| ||| || | | ||||||||| || |||||||| | || | Sbjct 3240806 CGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAGATAATC 3240865 Query 13910 CCTTCTCTTTAG-TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGT 13968 |||| || | | | | | ||| |||||||| || || | ||| ||||| || ||||| Sbjct 3240866 CCTTTGCTGTGGATCCCT--AATATATGTATCGATCAGCACGCTGTACATCTCCGAGTGC 3240923 Query 13969 ATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCC 14028 | || || || || || ||||| ||||| ||||| | |||||| | ||| |||||| Sbjct 3240924 ACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGCACCTCC 3240983 Query 14029 GAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC 14088 | || | || ||| || ||||||||||| ||||| || ||||| || || Sbjct 3240984 TGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCGGAGGCGGCAAAGAAGGCG 3241043 Query 14089 AATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAATCC 14148 | | | ||||||| |||| | || | | | ||| || || |||||| Sbjct 3241044 AGCACATGCGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCCGCCAAATCC 3241103 Query 14149 TTAGAAAGATCTACTTCATCAACTGTCCAAAA 14180 || || ||||| || || || || ||||| || Sbjct 3241104 TTGGAGAGATCCACCTCCTCCACAGTCCAGAA 3241135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478540624054920