Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 551 7e-152 seq4 199 5e-46 >seq2 Length=4222574 Score = 551 bits (610), Expect = 7e-152 Identities = 1251/1873 (67%), Gaps = 28/1873 (1%) Strand=Plus/Minus Query 70827 TTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCAT 70886 ||| || || ||||| |||||||| || || ||||| |||| |||||||| || Sbjct 4215994 TTTTGTGCGAAGATAATACATGCCGGTCTTAAGACCTGCTTTCCACGAATAAAAATGGAT 4215935 Query 70887 ACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATC 70946 |||| ||| ||| |||| || |||| ||||||||| | |||||||||||||| Sbjct 4215934 TGATGTTAATTTTCCATAATTAGGTTCAGCTACGTGAATATTGAAAGACTGACTTTGATC 4215875 Query 70947 GATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAAT 71006 || |||||||| ||||| || ||||||||||| | | || || ||| ||||| | Sbjct 4215874 AATAAAGGCTCCTCTGTCAGCCGCCATTTTTATAGTTGATTTAATTGAAATCTCCCACAC 4215815 Query 71007 AGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTTTG--TATTCTGAATGGATCCACC 71063 |||||||| || || | | | |||| | | | || |||| || || || |||| Sbjct 4215814 TGTTTTATACAAATCACGAATTTCCTTCGGAATTGATTCAATATTTTGTATTGAACCACG 4215755 Query 71064 ATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCT 71123 || || || || |||||| ||||| |||| ||| || | ||||||||| | | Sbjct 4215754 ATTTGATATTATTTGATTTTTCATCTCGTCATCCCACAAATCAAGTTCGGTTAAATCACG 4215695 Query 71124 AAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATT 71183 || | ||| | || |||||||||||||| || |||||||||| | |||||||| || Sbjct 4215694 GAGTAAGTGATGGTTTACTACTTGAAATTCGCCGGACAATACTCGTCTTGTGTAAATGTT 4215635 Query 71184 ACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGG 71243 ||||| || || | |||||||| || |||| ||||| ||||| ||||| || || Sbjct 4215634 TGAAGTATAAGGCTCGAACGACTCATTGTTGCCCATTATTTGTGCAGTAGATGCTGTAGG 4215575 Query 71244 CATAGGTGCCACCAATAGACTATTTCTAAGACCATGTG-----ATCGGATTTTATCTTTT 71298 ||| || || || | || | |||||| | ||||||| |||| ||||| || Sbjct 4215574 CATGGGAGCAACGAGTAAAGAATTTCTGACACCATGTTGCGCTATCG-ATTTT----TTA 4215520 Query 71299 AGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATG 71358 ||| ||||| | ||||||||| | ||| || Sbjct 4215519 AGAACATCCCAGTCCCAAAGATCTGTTGGCGATTTATTCCACATATCATACTGCAAAATT 4215460 Query 71359 CCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCA 71418 || || || | ||| |||| || || |||||||| ||| ||| |||| |||| Sbjct 4215459 CCTTTGCTTACTGGACTTCCAACATAAGTCTCATATGGTCCATCTCTTTGAGCTAATTCA 4215400 Query 71419 CAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGT 71478 || || || || | |||||||| || || ||||||||||||| || ||| | | | Sbjct 4215399 CAGCTGGCTTCCAGAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAAAAGAAAT 4215340 Query 71479 GCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACG 71538 || || | || || | | ||| | | || |||||||| || || ||||| || Sbjct 4215339 GCATCATGACTTTCGTAAGAATACCGCATTAATATTAACGCGTCCGCAAACCCTTGGACT 4215280 Query 71539 CCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAA 71598 ||||| || ||||| | ||| | ||| || ||| ||||||||| | ||| || ||| Sbjct 4215279 CCAATTCCAATAGGACGGTGGCGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAA 4215220 Query 71599 TTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTG 71658 || ||||| || ||||| || | ||| | | | ||| || || || || || Sbjct 4215219 TTTATATCAATTATTTTGTTTAAGTTTTTCGTAACAATTTTAGTTACTTCTTTAAGCTTT 4215160 Query 71659 AGAAAATCAAA---TCTCCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTA 71715 ||| ||| | | | ||| | ||||||| || | |||| || |||| |||| Sbjct 4215159 TTAAAGTCATACGATTTTTCATGCGTCACAAACATATTAAGTGCAATTGACGCCAAATTA 4215100 Query 71716 CAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACAC 71775 || || |||| |||| | | | ||| | | ||||| ||||| |||||||| || Sbjct 4215099 CACACAGCTATTTCATCTGGTGCTGAATACTCAACTATTTCTGTGCACAGATTACTGCAT 4215040 Query 71776 TTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATA 71835 || || ||||| | ||||||||| || || ||| ||||||||| ||||||| | | || Sbjct 4215039 TTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACGAATCCTTAAATAACATG 4214980 Query 71836 AACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 71895 | || ||||| || || | |||||||| ||||| || ||| | | ||||||| Sbjct 4214979 TAGGGTGTACCCGTCTCTACTTGAGATTCGATAATGGCAAACCAAAGAGATTGAGCCTTA 4214920 Query 71896 ATTATATTCTTGTATCTCTT--TTCTCTTTCGTATTGTGTATATAATCGTT--CGAACTC 71951 || | || | ||| | |||| ||| |||| || |||||| ||| | || || Sbjct 4214919 ATAAC--TCGATTCGCTCGTCCTTCTTGTTCATATT-TG-ATATAAAGGTTTTCAAAATC 4214864 Query 71952 GTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCC 72011 || |||||| ||| | |||||||||| || |||||||| | |||||| ||| | Sbjct 4214863 TTCACCCCAAACATCTGGAAGGCCAGGACATTTATGTGGACACATTAGTGACCAATCTTC 4214804 Query 72012 ATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 72071 || | | || ||||||||||| |||||||||||||| | || | ||| ||||| | Sbjct 4214803 ATTGGCTTCAACACGTTTCATAAAAAGATCAGGAATCCACAATGCAAAAAACAGATCGCG 4214744 Query 72072 GGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGA 72131 | | ||| ||||| ||||| ||||| |||||||| || | || | | | ||| || Sbjct 4214743 CGCCCGATGTTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACATCTGA 4214684 Query 72132 ATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTAT 72191 ||||| || || ||||| || || | |||| || | ||| || |||||||| | Sbjct 4214683 GTGCCAAGGCTCTAAGTAAATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGATCGAC 4214624 Query 72192 GTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATAATACCATTGGATGCACCAT 72250 || | || |||||| ||||||| |||||||| | |||| ||||| || | ||| | Sbjct 4214623 ATAACGTGCCACATTATTAAAAACTCTTAACATTGGTACTAAT-CCATTTGAAGTACCGT 4214565 Query 72251 TGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCC 72310 | || || | || | |||| | || |||||| | || || || || || | Sbjct 4214564 TCGTTCCACAAATTGATGTTCCTTTAGCTCGAATACAGTGAACATTCAGTCCAATGCCAC 4214505 Query 72311 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 72370 ||||| || || || | ||||||| | | | | | | | || || || || || Sbjct 4214504 CTGCCGACTTTGAAATCATTGCGCATTGCTCAACTGATTTAAAAATCCCTTCAATTGAAT 4214445 Query 72371 CATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 72429 || || || |||||| ||||| || ||||| ||| |||| | || | ||| | Sbjct 4214444 CAGACACTATAGTTAAG-AGAAAGCATGAAGACAATTGTGGACGGTTTGTGGCTGCAGCA 4214386 Query 72430 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATA 72489 || | || || || || || ||||| | ||||| || | |||||| || || | Sbjct 4214385 AAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGTTTCCACT 4214326 Query 72490 GCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGT 72549 || || || ||||| |||||| |||| || |||||||||| || |||||| ||| Sbjct 4214325 GCAGAATCAATATCTTCGCCATGTATACCTATAGCAACACGCATTAGCAAATGCTGTGGT 4214266 Query 72550 CTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCA 72609 ||||| | || || ||||||||| | |||||| || || | || ||||| ||| Sbjct 4214265 CTTTCTGCTATTTTTCCATTTATTTTTAGCAAGTAAGACCGCTCAAGTGTCTTAAATCCA 4214206 Query 72610 AAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATAT 72669 || ||||| ||| ||| || || || || |||||| | || || | |||| || Sbjct 4214205 AAGTAGTTATATCCAAAATCACGATCATATATAATAGCAGAGTTCAAGCGATCCGAATTA 4214146 Query 72670 TTGTTAACTATAT 72682 || |||||||||| Sbjct 4214145 TTTTTAACTATAT 4214133 >seq4 Length=22154029 Score = 199 bits (220), Expect = 5e-46 Identities = 497/746 (67%), Gaps = 9/746 (1%) Strand=Plus/Plus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||| |||| ||||| ||| ||||| || || || |||||||| ||||| || || Sbjct 3240309 GACGTAACGCCCATACGTTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCA 3240368 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878 |||| || || | |||||||| || ||||| | ||| || ||||| || Sbjct 3240369 TCCAGCGAGATCATCTCCATGAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACA 3240428 Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAA 41938 || | ||| | || | ||| || | ||||| |||||| ||||| | ||||| Sbjct 3240429 CCGAGTTCCACCAGCAGACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAA 3240488 Query 41939 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 41998 ||||| || || | || || || ||||| | || ||||| ||||| ||||| | || Sbjct 3240489 TTCATGCCAATCAAATTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACA 3240548 Query 41999 GCGTCTGTTATAATA--GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAA 42056 || || | ||||| ||| ||| | | | | || | | || ||||| | Sbjct 3240549 GCATCCGAGATAATCTCGATGATACGCTCCCGGC--TGGGCCGTTGCACCAAATGCCGGA 3240606 Query 42057 ACATCAA-ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||||| ||| || || || || |||| ||||| || | || || || ||||| Sbjct 3240607 ACATCATGACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAG 3240665 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 ||||| || || ||||| || |||||||| || |||||||| || || ||||| ||| Sbjct 3240666 AACGTCAGACCTGGCATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCG 3240725 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCACT 42234 ||||||||||| || || || ||||| || |||| |||||| ||| | || | | Sbjct 3240726 CTGAAGAAGATTCCCTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCC 3240785 Query 42235 GTC-ATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 || ||| ||||| | |||||||| ||||| || ||| ||||| ||||| Sbjct 3240786 TTCGATGAAATCCAAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCA 3240845 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 |||||||| || ||||| | ||| | ||| ||| |||||||||||||| | Sbjct 3240846 ATGGCATTGAACAGATAATCCCTTTGCTGTGGATCCCTAATATATGTATCGATCAGCACG 3240905 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 || ||||| || || || | || || ||||| || ||||| || |||||||| | || Sbjct 3240906 CTGTACATCTCCGAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCT 3240965 Query 42413 TCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCA 42472 ||||| | || || || | || || || | | ||| || || || || || || Sbjct 3240966 TCGGTTATTTGCACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCG 3241025 Query 42473 CTGGCTGCAAAAAACGCCAATACATG 42498 ||| ||||| || || | ||||| Sbjct 3241026 GAGGCGGCAAAGAAGGCGAGCACATG 3241051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671071641450280