Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq2 143 3e-29
>seq2
Length=4222574
Score = 143 bits (158), Expect = 3e-29
Identities = 969/1548 (63%), Gaps = 73/1548 (5%)
Strand=Plus/Minus
Query 156471 TTAGATCATCGACCAAGTAGCGGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCA 156530
||| |||| || |||| |||| || |||||||||||||| ||||| || |||||
Sbjct 4215704 TTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCGCCGGACAATACTCGTCTTG 4215645
Query 156531 AAAACAAATTACTGTGAA----ACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCG 156586
| | || |||| | || || || ||||| |||||| | |||||||||
Sbjct 4215644 TGTAAATGTT----TGAAGTATAAGGCTCGAACGACTCATTGTTGCCCATTATTTGTGCA 4215589
Query 156587 GTCGTGGCCGTCGGCATGTACGCCACAAGCAATGAATTACGTAATCCGTATTTTTGTAT- 156645
|| | || || |||||| || || || || ||||| | | || | || |||
Sbjct 4215588 GTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACACCATGTTGCGCTATC 4215529
Query 156646 -ATTTATTTTCAACTGTGACCAGTCCCATAACGAAGTCGGTACCGTATTCCACAAATCGT 156704
|||| || ||| ||||||||| | || || ||||||||| ||| |
Sbjct 4215528 GATTTTTTAAGAACATC--CCAGTCCCAAAGATCTGTTGGCGATTTATTCCACATATCAT 4215471
Query 156705 ATTGCAATATTCCTTCGCTCGCTTTGCTACCGGCAAACGTGCTATAAGGCTCA-CTAACA 156763
| ||||| ||||||| ||| || || || || | || ||| || || ||
Sbjct 4215470 ACTGCAAAATTCCTTTGCTTACTGGACTTCCAACATAAGTCTCATATGGTCCATCTCTTT 4215411
Query 156764 GATGCCAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTA 156823
|| || | ||| | ||||| || || || ||| || | |||||| ||| || | |
Sbjct 4215410 GA-GCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTTCGAAAATCTGCTGA 4215352
Query 156824 TTCAATAGAACGGCAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCC 156883
|| || |||| ||| ||| || |||| | |||| | | || || || ||
Sbjct 4215351 TTTAAAAGAAATGCATCATGACTTTCGTAAGAATACCGCATTAATATTAACGCGTCCGCA 4215292
Query 156884 AAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCA 156943
|| ||||| | ||||| || || ||||| ||||| | ||| |||||||| || |
Sbjct 4215291 AACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATTTTTTAGCTTCTGGC 4215232
Query 156944 ATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCACTACATGTTTGACCACA 157003
| ||||||| |||| |||||| ||||| || || | | | ||| ||| ||
Sbjct 4215231 AAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTAACAATTTTAGTTACT 4215172
Query 157004 GTGTGCAATAGTTGAAAATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATC 157060
| | || ||| ||| | | | |||| | | | | |||| | |||||
Sbjct 4215171 TCTTTAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACATATTAAGTGCAATT 4215112
Query 157061 GACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACAC 157120
||||| | |||||| || || |||| || || || |||| | |||||||| | |||
Sbjct 4215111 GACGCCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAACTATTTCTGTGCAC 4215052
Query 157121 AAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCC 157180
| ||| ||||||||||| ||| ||| ||| |||||||| | ||| || | |||
Sbjct 4215051 AGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACGAATCC 4214992
Query 157181 TTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATG------------ 157228
|| |||||||||| ||||| || || || ||||| ||| || |||
Sbjct 4214991 TTAAATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAATGGCAAACCAAAGA 4214932
Query 157229 --TTGCGCATTAATGTAACCGCGGGCATTTGCTCGCGAAACTGGCCTTTATCCTCGTAAT 157286
||| || ||||| | | || ||| |||| | |||| | || || |
Sbjct 4214931 GATTGAGCCTTAAT---AACTCG---ATTCGCTC--------GTCCTTCTTGTTCATATT 4214886
Query 157287 GTTTGTACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCGTTAG 157346
| || || |||||| || ||||| | ||| || |||||| | | |
Sbjct 4214885 TGATATAAAGGTTTTCAAAATCTTCACCCCAAACATCTGGAAGGCCAGGACATTTATGTG 4214826
Query 157347 GACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATATCGGGAACCC 157406
||||||||| |||||| | || ||||||| ||||||||||| | ||| |||| ||
Sbjct 4214825 GACACATTAGTGACCAATCTTCATTGGCTTCAACACGTTTCATAAAAAGATCAGGAATCC 4214766
Query 157407 ATAAAGCGTTCATCAAATCACGCGCTTTGGTG-TCTTCGCTGCCAATGTTTCGACGCATG 157465
| || || | || ||| ||||| | || || || | ||| | ||| | |
Sbjct 4214765 ACAATGCAAAAAACAGATCGCGCGC-CCGATGTTCCTCCTTTCCAGTATTTTTTTTAAGG 4214707
Query 157466 TGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCTCCTTTT 157525
| |||| || | | || | ||||| || || | ||| | || ||||| |
Sbjct 4214706 TCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGCTCCAGGT 4214647
Query 157526 CGCTTGCCA---CCTTGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGT 157582
| || ||| || ||||| || | ||| ||| |||||||||||||| | |||||||
Sbjct 4214646 CTTTTACCACCGCCCTGATCGACATAACGTGCCACATTATTAAAAACTCTTAACATTGGT 4214587
Query 157583 AGCAGTCCGCTGGCGGTGCCGTTCGT----AGATTTTATTTTGCTGTTGCGGCCGCGTAC 157638
| | ||| | | || |||||||| | || || || || | | | || |
Sbjct 4214586 ACTAATCCATTTGAAGTACCGTTCGTTCCACAAATTGATGTTCCTTTAG----CTCGAAT 4214531
Query 157639 GCTGTTCACGTTCAATCCAATACCGCC-GCCGTGTTTAGAGATCATGGCGCAATCGTTTA 157697
| || || |||| |||||| || || |||| ||| || ||||| ||||| | | |
Sbjct 4214530 ACAGTGAACATTCAGTCCAATGCCACCTGCCGACTTT-GAAATCATTGCGCATTGCTCAA 4214472
Query 157698 ATGTGTTATAGATGCCGCGAATGCTATCGCTTTCCATGGTCAATAGAAAACATGAACTCA 157757
|| ||| | || || ||| ||| | || || || ||||| |||||| ||
Sbjct 4214471 CTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAGAGAAAGCATGAAGACA 4214412
Query 157758 TCTGCGGA--GTCAGACTGCCGGCAGCGAACATGGTTGGGCTTGCGTGCGTGTACATTTT 157815
|| ||| || | || | ||||| || | ||||| ||| || || | |
Sbjct 4214411 ATTGTGGACGGTTTG--TGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAA---- 4214358
Query 157816 TCTGCTCAAA----AATTTATAGGATTTTATGGCACTATCAATGTCGTCTCCAAAGATTC 157871
||||| | || || |||| || | ||| |||||| || || ||| || |
Sbjct 4214357 AACGCTCAGATAGCAAATTGTAGGTTTCCACTGCAGAATCAATATCTTCGCCATGTATAC 4214298
Query 157872 CTAAAGCTATACGCATGTGCATATGTTGAATCCTTTCGGCAACCTTTTCATTAATTTTTA 157931
||| ||| | |||||| ||| ||| || ||||| || | ||| |||| |||||||
Sbjct 4214297 CTATAGCAACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTA 4214238
Query 157932 TCAAATAACCATTTTTTAGAGTTTGATATCCAAAGTAATTGTAGTCCA 157979
||| ||| | || || | | |||||||||| || || ||||
Sbjct 4214237 GCAAGTAAGACCGCTCAAGTGTCTTAAATCCAAAGTAGTTATA-TCCA 4214191
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| || || | ||| | ||||| || | || || || || || |||||||| |||
Sbjct 180296 GCCACCACGCAGACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGA 180237
Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075
| |||| || | || || || || || || ||| |||||||||| |||||||| || |
Sbjct 180236 TAGAGTGCGTCCA-TCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTG 180178
Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135
| || ||||||||||| || || || | | || | ||||| | ||| || |
Sbjct 180177 GGATCCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGA 180118
Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
| || | || | ||||||||||| | ||||| ||||| ||||||||
Sbjct 180117 CCTCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCAT 180069
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506963362662960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |