Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 >seq2 Length=4222574 Score = 143 bits (158), Expect = 3e-29 Identities = 969/1548 (63%), Gaps = 73/1548 (5%) Strand=Plus/Minus Query 156471 TTAGATCATCGACCAAGTAGCGGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCA 156530 ||| |||| || |||| |||| || |||||||||||||| ||||| || ||||| Sbjct 4215704 TTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCGCCGGACAATACTCGTCTTG 4215645 Query 156531 AAAACAAATTACTGTGAA----ACGGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCG 156586 | | || |||| | || || || ||||| |||||| | ||||||||| Sbjct 4215644 TGTAAATGTT----TGAAGTATAAGGCTCGAACGACTCATTGTTGCCCATTATTTGTGCA 4215589 Query 156587 GTCGTGGCCGTCGGCATGTACGCCACAAGCAATGAATTACGTAATCCGTATTTTTGTAT- 156645 || | || || |||||| || || || || ||||| | | || | || ||| Sbjct 4215588 GTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACACCATGTTGCGCTATC 4215529 Query 156646 -ATTTATTTTCAACTGTGACCAGTCCCATAACGAAGTCGGTACCGTATTCCACAAATCGT 156704 |||| || ||| ||||||||| | || || ||||||||| ||| | Sbjct 4215528 GATTTTTTAAGAACATC--CCAGTCCCAAAGATCTGTTGGCGATTTATTCCACATATCAT 4215471 Query 156705 ATTGCAATATTCCTTCGCTCGCTTTGCTACCGGCAAACGTGCTATAAGGCTCA-CTAACA 156763 | ||||| ||||||| ||| || || || || | || ||| || || || Sbjct 4215470 ACTGCAAAATTCCTTTGCTTACTGGACTTCCAACATAAGTCTCATATGGTCCATCTCTTT 4215411 Query 156764 GATGCCAGTTCGTAACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTA 156823 || || | ||| | ||||| || || || ||| || | |||||| ||| || | | Sbjct 4215410 GA-GCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTTCGAAAATCTGCTGA 4215352 Query 156824 TTCAATAGAACGGCAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCC 156883 || || |||| ||| ||| || |||| | |||| | | || || || || Sbjct 4215351 TTTAAAAGAAATGCATCATGACTTTCGTAAGAATACCGCATTAATATTAACGCGTCCGCA 4215292 Query 156884 AAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCA 156943 || ||||| | ||||| || || ||||| ||||| | ||| |||||||| || | Sbjct 4215291 AACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATTTTTTAGCTTCTGGC 4215232 Query 156944 ATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCACTACATGTTTGACCACA 157003 | ||||||| |||| |||||| ||||| || || | | | ||| ||| || Sbjct 4215231 AAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTAACAATTTTAGTTACT 4215172 Query 157004 GTGTGCAATAGTTGAAAATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATC 157060 | | || ||| ||| | | | |||| | | | | |||| | ||||| Sbjct 4215171 TCTTTAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACATATTAAGTGCAATT 4215112 Query 157061 GACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACAC 157120 ||||| | |||||| || || |||| || || || |||| | |||||||| | ||| Sbjct 4215111 GACGCCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAACTATTTCTGTGCAC 4215052 Query 157121 AAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCC 157180 | ||| ||||||||||| ||| ||| ||| |||||||| | ||| || | ||| Sbjct 4215051 AGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACGAATCC 4214992 Query 157181 TTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATG------------ 157228 || |||||||||| ||||| || || || ||||| ||| || ||| Sbjct 4214991 TTAAATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAATGGCAAACCAAAGA 4214932 Query 157229 --TTGCGCATTAATGTAACCGCGGGCATTTGCTCGCGAAACTGGCCTTTATCCTCGTAAT 157286 ||| || ||||| | | || ||| |||| | |||| | || || | Sbjct 4214931 GATTGAGCCTTAAT---AACTCG---ATTCGCTC--------GTCCTTCTTGTTCATATT 4214886 Query 157287 GTTTGTACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCGTTAG 157346 | || || |||||| || ||||| | ||| || |||||| | | | Sbjct 4214885 TGATATAAAGGTTTTCAAAATCTTCACCCCAAACATCTGGAAGGCCAGGACATTTATGTG 4214826 Query 157347 GACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATATCGGGAACCC 157406 ||||||||| |||||| | || ||||||| ||||||||||| | ||| |||| || Sbjct 4214825 GACACATTAGTGACCAATCTTCATTGGCTTCAACACGTTTCATAAAAAGATCAGGAATCC 4214766 Query 157407 ATAAAGCGTTCATCAAATCACGCGCTTTGGTG-TCTTCGCTGCCAATGTTTCGACGCATG 157465 | || || | || ||| ||||| | || || || | ||| | ||| | | Sbjct 4214765 ACAATGCAAAAAACAGATCGCGCGC-CCGATGTTCCTCCTTTCCAGTATTTTTTTTAAGG 4214707 Query 157466 TGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCTCCTTTT 157525 | |||| || | | || | ||||| || || | ||| | || ||||| | Sbjct 4214706 TCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGCTCCAGGT 4214647 Query 157526 CGCTTGCCA---CCTTGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATTGGT 157582 | || ||| || ||||| || | ||| ||| |||||||||||||| | ||||||| Sbjct 4214646 CTTTTACCACCGCCCTGATCGACATAACGTGCCACATTATTAAAAACTCTTAACATTGGT 4214587 Query 157583 AGCAGTCCGCTGGCGGTGCCGTTCGT----AGATTTTATTTTGCTGTTGCGGCCGCGTAC 157638 | | ||| | | || |||||||| | || || || || | | | || | Sbjct 4214586 ACTAATCCATTTGAAGTACCGTTCGTTCCACAAATTGATGTTCCTTTAG----CTCGAAT 4214531 Query 157639 GCTGTTCACGTTCAATCCAATACCGCC-GCCGTGTTTAGAGATCATGGCGCAATCGTTTA 157697 | || || |||| |||||| || || |||| ||| || ||||| ||||| | | | Sbjct 4214530 ACAGTGAACATTCAGTCCAATGCCACCTGCCGACTTT-GAAATCATTGCGCATTGCTCAA 4214472 Query 157698 ATGTGTTATAGATGCCGCGAATGCTATCGCTTTCCATGGTCAATAGAAAACATGAACTCA 157757 || ||| | || || ||| ||| | || || || ||||| |||||| || Sbjct 4214471 CTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAGAGAAAGCATGAAGACA 4214412 Query 157758 TCTGCGGA--GTCAGACTGCCGGCAGCGAACATGGTTGGGCTTGCGTGCGTGTACATTTT 157815 || ||| || | || | ||||| || | ||||| ||| || || | | Sbjct 4214411 ATTGTGGACGGTTTG--TGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAA---- 4214358 Query 157816 TCTGCTCAAA----AATTTATAGGATTTTATGGCACTATCAATGTCGTCTCCAAAGATTC 157871 ||||| | || || |||| || | ||| |||||| || || ||| || | Sbjct 4214357 AACGCTCAGATAGCAAATTGTAGGTTTCCACTGCAGAATCAATATCTTCGCCATGTATAC 4214298 Query 157872 CTAAAGCTATACGCATGTGCATATGTTGAATCCTTTCGGCAACCTTTTCATTAATTTTTA 157931 ||| ||| | |||||| ||| ||| || ||||| || | ||| |||| ||||||| Sbjct 4214297 CTATAGCAACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTA 4214238 Query 157932 TCAAATAACCATTTTTTAGAGTTTGATATCCAAAGTAATTGTAGTCCA 157979 ||| ||| | || || | | |||||||||| || || |||| Sbjct 4214237 GCAAGTAAGACCGCTCAAGTGTCTTAAATCCAAAGTAGTTATA-TCCA 4214191 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | ||||| || | || || || || || |||||||| ||| Sbjct 180296 GCCACCACGCAGACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGA 180237 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | |||| || | || || || || || || ||| |||||||||| |||||||| || | Sbjct 180236 TAGAGTGCGTCCA-TCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTG 180178 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||||||||| || || || | | || | ||||| | ||| || | Sbjct 180177 GGATCCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGA 180118 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | || | ||||||||||| | ||||| ||||| |||||||| Sbjct 180117 CCTCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCAT 180069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506963362662960