Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq4 230 3e-55
seq6 179 5e-40
seq2 158 2e-33
>seq4
Length=22154029
Score = 230 bits (254), Expect = 3e-55
Identities = 556/832 (67%), Gaps = 30/832 (4%)
Strand=Plus/Minus
Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097
|||| ||||||| || ||||| || || ||||| ||||| |||||||| || || |
Sbjct 3241149 AGGCCGAGGCCTCATTCTGGACTGTGGAGGAGGTGGATCTCTCCAAGGATTTGGCGGACT 3241090
Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157
||| | ||||| ||||| | ||||| | ||||| ||||| | | ||||||||||
Sbjct 3241089 GGG---CACGTTTAACTGATAACGAGCGTCACTTTATCTCGCATGTGCTCGCCTTCTTTG 3241033
Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217
||| ||||||||| || || || || |||||| | || ||| || ||| || |
Sbjct 3241032 CCGCCTCCGATGGCATTGTTAATGAGAATCTGGTCGAGCGCTTCAGCCAGGAGGTGCAAA 3240973
Query 125218 TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276
| | || | ||| || || || || || ||||| || ||||| |||||||||||
Sbjct 3240972 TAACCGAAG-CTCGTTGTTTCTATGGCTTTCAAATTGCCATGGAGAATGTGCACTCGGAG 3240914
Query 125277 ATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACAT--GCTCT 125334
|||||| ||||| || | || ||| | ||||| || | ||| || || |
Sbjct 3240913 ATGTACAGCGTGCTGATCGATACATATATTAGGGATCCACA--GCAAAGGGATTATCTGT 3240856
Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGA 125394
| || || || || || |||| || | ||||||| | |||| | | ||||
Sbjct 3240855 TCAATGCCATTGAAACAATGCCCGCTGTCAAGCGAAAGGCTGATTGGGCGCTCTCTTGGA 3240796
Query 125395 -TCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450
| || || ||| | || || | ||| ||| | | || || || ||||| |||
Sbjct 3240795 TTTCAT--CG--AAGGCGGCGAACTTTGGCGAGAGAATTATCGCGTTTGCTGCCGTGGAG 3240740
Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510
|| |||||||| || || ||||| | ||||||||||| |||||||| || || |||
Sbjct 3240739 GGAATCTTCTTCAGCGGAAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTGATG 3240680
Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570
|| || |||||| | || ||||| || || || ||||||||| | || |||||||||
Sbjct 3240679 CCAGGTCTGACGTTCTCCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTTT 3240620
Query 125571 GCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA--GATCCAGCGATGAAAAGG 125628
|| | | |||| || || || ||||| | ||||| ||
Sbjct 3240619 GCTGTCATGATGTTCCG---GCATTTG--------GTGCAACGGCCCAGCCGGGAGCGTA 3240571
Query 125629 TCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTAC 125688
||||| | ||| | | ||||| || | || || ||||||||||| || || | || |
Sbjct 3240570 TCATCGAGATTATCTCGGATGCTGTTACCATTGAGCAAGAGTTTCTCACAGATGCTCTGC 3240511
Query 125689 CGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAG 125748
| |||| ||||||||||||| || | |||| | | || || || |||||||| |
Sbjct 3240510 CCGTCAATTTGATTGGCATGAATTGTGCATTGATGTCCCAATATATTGAATTTGTGGCGG 3240451
Query 125749 ATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATT 125808
||||||| ||| || | || |||| || ||||| | |||||||| || |
Sbjct 3240450 ATCGTCTGCTGGTGGAACTCGGTGTTGGCAAAATCTACAATACGAAGAATCCATTCACCT 3240391
Query 125809 TCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGT 125860
||||| | || || || || || || || ||||||||||||||||| ||
Sbjct 3240390 TCATGGAGATGATCTCGCTGGATGGCAAAACTAACTTTTTCGAGAAGAAAGT 3240339
>seq6
Length=21059900
Score = 179 bits (198), Expect = 5e-40
Identities = 383/571 (67%), Gaps = 16/571 (3%)
Strand=Plus/Plus
Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161
|||||| | |||||||| ||||| || ||||| | || ||||||||||| || ||||||
Sbjct 9487873 TTGCGGAAGAAGATGACGCCGGCACGTGGACCGCGCAGCGTCTTGTGCGTCGTTGTGGTC 9487932
Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221
|| ||||| |||| || || || || | | | || | |||||| || | |
Sbjct 9487933 ACGATGTCGGCGAACTCGAACGGCGAGGGGATCTGCTCGGCGGCCACCAAGCCGGCGACG 9487992
Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281
|| || || ||||||||||| ||| |||| | | || |||| ||||| ||||
Sbjct 9487993 TGCGCCATGTCGGCCATCAGATAGGCGCCGACCTCGTCACAGATCTTACGGAAGCGTCCG 9488052
Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341
|| || | | || | |||||| | |||| || ||||| | || ||| ||||
Sbjct 9488053 TAATCGAGCAGGCGTGAATAGCACGAGATGCCAGCAATGATGATCCGAGGGCGGAATG-- 9488110
Query 127342 TTGGCACT--CTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGT 127399
| || || |||||| || ||| | ||||| | ||| || |||| |||| |||||||
Sbjct 9488111 TGCGCGCTGCCTCGGCCAGCTTGTCGTAGTCAATGAGGCCCGTCTCCGGATTTACCTTGT 9488170
Query 127400 ACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATC 127447
|||||||||| ||||| |||| ||||| || || | || ||| ||| |
Sbjct 9488171 ACGGCATGCTCTCGAAGAAGATGGATGTGGCCGAGATCTTCTTGCTGGGCGTGAAGAAGC 9488230
Query 127448 CGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAA 127507
||||||||| ||||| || ||||||||||| || ||||| || | | |||| || |
Sbjct 9488231 CGTGCGTCAAATGGCCGCCATCGGGCAGATCCAGGCCCATAATACGATCGTGTGGACGCA 9488290
Query 127508 CGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTC 127567
| || || || || || | |||||| ||| ||||| || || || ||| || |
Sbjct 9488291 GTACACCCGTATAGACAGCCAGATTGGCCGGCGATCCCGAATAGGGCTGCACATTGACGC 9488350
Query 127568 CCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGA 127627
|||| ||| || | ||||||| | ||| | || | |||| || || |
Sbjct 9488351 CCCAATCGTTGCTATTGAGATTGAACAATTCGAGGCCGCGAGCCCGTGCCAGATTCTCAA 9488410
Query 127628 TGCGATCGATAAACTCGTTACCACCATAGTA 127658
| |||| || |||| || |||||||| ||
Sbjct 9488411 TCTGATCAATGAACTGATTGCCACCATAATA 9488441
>seq2
Length=4222574
Score = 158 bits (174), Expect = 2e-33
Identities = 284/407 (70%), Gaps = 10/407 (2%)
Strand=Plus/Minus
Query 70066 GGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGA 70125
||| |||||||| ||||| || || || |||||| | |||| ||| | || |||| |
Sbjct 2651887 GGGTGATCTGGGTCCAGTCTATGGCTTTCAGTGGCGTCACTTTGGCGCTAAATATGGTAA 2651828
Query 70126 CTGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACT 70183
||| ||| ||||| | || |||||| ||||||| ||||| ||| |||| || |||
Sbjct 2651827 ATGCACCGAC-GACTACACAGGCCAGGGTATTGATCAGTTGCA-ACAGGTCATCGATACT 2651770
Query 70184 CTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTG 70243
| | |||||| | ||| | | ||| |||||| | | ||||||||| || |
Sbjct 2651769 ATACGCAACAATCCGGCGGATCGTCGCATCATAATGTCCGCCTGGAATCCTTTGGACATA 2651710
Query 70244 CACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC---TCGTA--CGA-T 70297
| |||||||||| |||| || || ||||| ||| || || || ||| | || |
Sbjct 2651709 CCCCAAATGGCATTACCGCCATGCCACTGCCTGGTCCAATTCTATGTATCGCAGTCGCGT 2651650
Query 70298 GGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTT 70357
|| ||||||| ||| | |||||||| | || ||||||||||| || || ||||||||
Sbjct 2651649 GGTGAATTGTCCTGCCAACTGTATCAGCGCAGCGCCGACATGGGTCTGGGAGTACCCTTC 2651590
Query 70358 AACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCG 70417
|| || || ||| | ||||||| ||||||| ||||| | || || |||| |
Sbjct 2651589 AATATCGCCTCGTATGCCTTGTTGACCTACATGATCGCTCATGTGACGGGTTTGAAGCCC 2651530
Query 70418 CACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCA 70464
||| ||||| || || | || || |||||||| ||| |||||
Sbjct 2651529 GGCGATTTCGTCCATACGCTGGGTGATGCTCACGTCTATAATAATCA 2651483
Score = 131 bits (144), Expect = 2e-25
Identities = 322/483 (67%), Gaps = 8/483 (2%)
Strand=Plus/Minus
Query 70148 CAGGGTGTTGATCAATTGCAGACAA-TCATTGACACTCTCAAGACCAATCCAACAGATAG 70206
|||||| ||||||| ||||| ||| |||| || ||| | | |||||| | ||| |
Sbjct 2650608 CAGGGTATTGATCAGTTGCA-ACAGGTCATCGATACTATACGCAACAATCCGGCGGATCG 2650550
Query 70207 GAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTG 70266
| ||| |||||| | | ||||||||| || | | |||||||||| |||| || ||
Sbjct 2650549 TCGCATCATAATGTCCGCCTGGAATCCTTTGGACATACCCCAAATGGCATTACCGCCATG 2650490
Query 70267 TCACTGTTTGGCTCAGTTTTAC---TCGTA--CGA-TGGCAAATTGTCATGCTTAATGTA 70320
||||| ||| || || || ||| | || ||| ||||||| ||| | ||||
Sbjct 2650489 CCACTGCCTGGTCCAATTCTATGTATCGCAGTCGCGTGGTGAATTGTCCTGCCAACTGTA 2650430
Query 70321 TCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTT 70380
|||| | || ||||||||||| || || |||||||| || || || ||| | ||||
Sbjct 2650429 TCAGCGCAGCGCCGACATGGGTCTGGGAGTACCCTTCAATATCGCCTCGTATGCCTTGTT 2650370
Query 70381 GACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGG 70440
||| ||||||| ||||| | || || |||| | ||| ||||| || || | ||
Sbjct 2650369 GACCTACATGATCGCTCATGTGACGGGTTTGAAGCCCGGCGATTTCGTCCATACGCTGGG 2650310
Query 70441 CGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCC 70500
|| |||||||| ||| ||||| | | || | || ||| | |||| || ||
Sbjct 2650309 TGATGCTCACGTCTATAATAATCATGTGAATCCCCTGCTGGAGCAGATGAAACGTGAACC 2650250
Query 70501 GAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTA 70560
| || || ||||| || | || | ||||| |||||||| |||| |
Sbjct 2650249 ACGTCCCTTCCCCAAACTTGTCTTCAAGAGGCAAGTTACGAATATTGAGGATTTTCGCTT 2650190
Query 70561 CGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCATGGTTCTGGCTGT 70620
||| ||||| ||| |||||| |||| ||| ||||||| |||| |||| ||
Sbjct 2650189 CGAGGATTTCGAAATTGTTGGTTACAATCCGTACGGCAAGATTCAAATGGAAATGGCCGT 2650130
Query 70621 TTA 70623
||
Sbjct 2650129 ATA 2650127
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 740984603128280
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