Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq4 230 3e-55 seq6 179 5e-40 seq2 158 2e-33 >seq4 Length=22154029 Score = 230 bits (254), Expect = 3e-55 Identities = 556/832 (67%), Gaps = 30/832 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| ||||||| || ||||| || || ||||| ||||| |||||||| || || | Sbjct 3241149 AGGCCGAGGCCTCATTCTGGACTGTGGAGGAGGTGGATCTCTCCAAGGATTTGGCGGACT 3241090 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 ||| | ||||| ||||| | ||||| | ||||| ||||| | | |||||||||| Sbjct 3241089 GGG---CACGTTTAACTGATAACGAGCGTCACTTTATCTCGCATGTGCTCGCCTTCTTTG 3241033 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217 ||| ||||||||| || || || || |||||| | || ||| || ||| || | Sbjct 3241032 CCGCCTCCGATGGCATTGTTAATGAGAATCTGGTCGAGCGCTTCAGCCAGGAGGTGCAAA 3240973 Query 125218 TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276 | | || | ||| || || || || || ||||| || ||||| ||||||||||| Sbjct 3240972 TAACCGAAG-CTCGTTGTTTCTATGGCTTTCAAATTGCCATGGAGAATGTGCACTCGGAG 3240914 Query 125277 ATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACAT--GCTCT 125334 |||||| ||||| || | || ||| | ||||| || | ||| || || | Sbjct 3240913 ATGTACAGCGTGCTGATCGATACATATATTAGGGATCCACA--GCAAAGGGATTATCTGT 3240856 Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGA 125394 | || || || || || |||| || | ||||||| | |||| | | |||| Sbjct 3240855 TCAATGCCATTGAAACAATGCCCGCTGTCAAGCGAAAGGCTGATTGGGCGCTCTCTTGGA 3240796 Query 125395 -TCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 | || || ||| | || || | ||| ||| | | || || || ||||| ||| Sbjct 3240795 TTTCAT--CG--AAGGCGGCGAACTTTGGCGAGAGAATTATCGCGTTTGCTGCCGTGGAG 3240740 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 || |||||||| || || ||||| | ||||||||||| |||||||| || || ||| Sbjct 3240739 GGAATCTTCTTCAGCGGAAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTGATG 3240680 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570 || || |||||| | || ||||| || || || ||||||||| | || ||||||||| Sbjct 3240679 CCAGGTCTGACGTTCTCCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTTT 3240620 Query 125571 GCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA--GATCCAGCGATGAAAAGG 125628 || | | |||| || || || ||||| | ||||| || Sbjct 3240619 GCTGTCATGATGTTCCG---GCATTTG--------GTGCAACGGCCCAGCCGGGAGCGTA 3240571 Query 125629 TCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTAC 125688 ||||| | ||| | | ||||| || | || || ||||||||||| || || | || | Sbjct 3240570 TCATCGAGATTATCTCGGATGCTGTTACCATTGAGCAAGAGTTTCTCACAGATGCTCTGC 3240511 Query 125689 CGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAG 125748 | |||| ||||||||||||| || | |||| | | || || || |||||||| | Sbjct 3240510 CCGTCAATTTGATTGGCATGAATTGTGCATTGATGTCCCAATATATTGAATTTGTGGCGG 3240451 Query 125749 ATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATT 125808 ||||||| ||| || | || |||| || ||||| | |||||||| || | Sbjct 3240450 ATCGTCTGCTGGTGGAACTCGGTGTTGGCAAAATCTACAATACGAAGAATCCATTCACCT 3240391 Query 125809 TCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGT 125860 ||||| | || || || || || || || ||||||||||||||||| || Sbjct 3240390 TCATGGAGATGATCTCGCTGGATGGCAAAACTAACTTTTTCGAGAAGAAAGT 3240339 >seq6 Length=21059900 Score = 179 bits (198), Expect = 5e-40 Identities = 383/571 (67%), Gaps = 16/571 (3%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | |||||||| ||||| || ||||| | || ||||||||||| || |||||| Sbjct 9487873 TTGCGGAAGAAGATGACGCCGGCACGTGGACCGCGCAGCGTCTTGTGCGTCGTTGTGGTC 9487932 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 || ||||| |||| || || || || | | | || | |||||| || | | Sbjct 9487933 ACGATGTCGGCGAACTCGAACGGCGAGGGGATCTGCTCGGCGGCCACCAAGCCGGCGACG 9487992 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || || ||||||||||| ||| |||| | | || |||| ||||| |||| Sbjct 9487993 TGCGCCATGTCGGCCATCAGATAGGCGCCGACCTCGTCACAGATCTTACGGAAGCGTCCG 9488052 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 || || | | || | |||||| | |||| || ||||| | || ||| |||| Sbjct 9488053 TAATCGAGCAGGCGTGAATAGCACGAGATGCCAGCAATGATGATCCGAGGGCGGAATG-- 9488110 Query 127342 TTGGCACT--CTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGT 127399 | || || |||||| || ||| | ||||| | ||| || |||| |||| ||||||| Sbjct 9488111 TGCGCGCTGCCTCGGCCAGCTTGTCGTAGTCAATGAGGCCCGTCTCCGGATTTACCTTGT 9488170 Query 127400 ACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATC 127447 |||||||||| ||||| |||| ||||| || || | || ||| ||| | Sbjct 9488171 ACGGCATGCTCTCGAAGAAGATGGATGTGGCCGAGATCTTCTTGCTGGGCGTGAAGAAGC 9488230 Query 127448 CGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAA 127507 ||||||||| ||||| || ||||||||||| || ||||| || | | |||| || | Sbjct 9488231 CGTGCGTCAAATGGCCGCCATCGGGCAGATCCAGGCCCATAATACGATCGTGTGGACGCA 9488290 Query 127508 CGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTC 127567 | || || || || || | |||||| ||| ||||| || || || ||| || | Sbjct 9488291 GTACACCCGTATAGACAGCCAGATTGGCCGGCGATCCCGAATAGGGCTGCACATTGACGC 9488350 Query 127568 CCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGA 127627 |||| ||| || | ||||||| | ||| | || | |||| || || | Sbjct 9488351 CCCAATCGTTGCTATTGAGATTGAACAATTCGAGGCCGCGAGCCCGTGCCAGATTCTCAA 9488410 Query 127628 TGCGATCGATAAACTCGTTACCACCATAGTA 127658 | |||| || |||| || |||||||| || Sbjct 9488411 TCTGATCAATGAACTGATTGCCACCATAATA 9488441 >seq2 Length=4222574 Score = 158 bits (174), Expect = 2e-33 Identities = 284/407 (70%), Gaps = 10/407 (2%) Strand=Plus/Minus Query 70066 GGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGA 70125 ||| |||||||| ||||| || || || |||||| | |||| ||| | || |||| | Sbjct 2651887 GGGTGATCTGGGTCCAGTCTATGGCTTTCAGTGGCGTCACTTTGGCGCTAAATATGGTAA 2651828 Query 70126 CTGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACT 70183 ||| ||| ||||| | || |||||| ||||||| ||||| ||| |||| || ||| Sbjct 2651827 ATGCACCGAC-GACTACACAGGCCAGGGTATTGATCAGTTGCA-ACAGGTCATCGATACT 2651770 Query 70184 CTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTG 70243 | | |||||| | ||| | | ||| |||||| | | ||||||||| || | Sbjct 2651769 ATACGCAACAATCCGGCGGATCGTCGCATCATAATGTCCGCCTGGAATCCTTTGGACATA 2651710 Query 70244 CACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTAC---TCGTA--CGA-T 70297 | |||||||||| |||| || || ||||| ||| || || || ||| | || | Sbjct 2651709 CCCCAAATGGCATTACCGCCATGCCACTGCCTGGTCCAATTCTATGTATCGCAGTCGCGT 2651650 Query 70298 GGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTT 70357 || ||||||| ||| | |||||||| | || ||||||||||| || || |||||||| Sbjct 2651649 GGTGAATTGTCCTGCCAACTGTATCAGCGCAGCGCCGACATGGGTCTGGGAGTACCCTTC 2651590 Query 70358 AACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCG 70417 || || || ||| | ||||||| ||||||| ||||| | || || |||| | Sbjct 2651589 AATATCGCCTCGTATGCCTTGTTGACCTACATGATCGCTCATGTGACGGGTTTGAAGCCC 2651530 Query 70418 CACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCA 70464 ||| ||||| || || | || || |||||||| ||| ||||| Sbjct 2651529 GGCGATTTCGTCCATACGCTGGGTGATGCTCACGTCTATAATAATCA 2651483 Score = 131 bits (144), Expect = 2e-25 Identities = 322/483 (67%), Gaps = 8/483 (2%) Strand=Plus/Minus Query 70148 CAGGGTGTTGATCAATTGCAGACAA-TCATTGACACTCTCAAGACCAATCCAACAGATAG 70206 |||||| ||||||| ||||| ||| |||| || ||| | | |||||| | ||| | Sbjct 2650608 CAGGGTATTGATCAGTTGCA-ACAGGTCATCGATACTATACGCAACAATCCGGCGGATCG 2650550 Query 70207 GAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTG 70266 | ||| |||||| | | ||||||||| || | | |||||||||| |||| || || Sbjct 2650549 TCGCATCATAATGTCCGCCTGGAATCCTTTGGACATACCCCAAATGGCATTACCGCCATG 2650490 Query 70267 TCACTGTTTGGCTCAGTTTTAC---TCGTA--CGA-TGGCAAATTGTCATGCTTAATGTA 70320 ||||| ||| || || || ||| | || ||| ||||||| ||| | |||| Sbjct 2650489 CCACTGCCTGGTCCAATTCTATGTATCGCAGTCGCGTGGTGAATTGTCCTGCCAACTGTA 2650430 Query 70321 TCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTT 70380 |||| | || ||||||||||| || || |||||||| || || || ||| | |||| Sbjct 2650429 TCAGCGCAGCGCCGACATGGGTCTGGGAGTACCCTTCAATATCGCCTCGTATGCCTTGTT 2650370 Query 70381 GACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGG 70440 ||| ||||||| ||||| | || || |||| | ||| ||||| || || | || Sbjct 2650369 GACCTACATGATCGCTCATGTGACGGGTTTGAAGCCCGGCGATTTCGTCCATACGCTGGG 2650310 Query 70441 CGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCC 70500 || |||||||| ||| ||||| | | || | || ||| | |||| || || Sbjct 2650309 TGATGCTCACGTCTATAATAATCATGTGAATCCCCTGCTGGAGCAGATGAAACGTGAACC 2650250 Query 70501 GAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTA 70560 | || || ||||| || | || | ||||| |||||||| |||| | Sbjct 2650249 ACGTCCCTTCCCCAAACTTGTCTTCAAGAGGCAAGTTACGAATATTGAGGATTTTCGCTT 2650190 Query 70561 CGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCATGGTTCTGGCTGT 70620 ||| ||||| ||| |||||| |||| ||| ||||||| |||| |||| || Sbjct 2650189 CGAGGATTTCGAAATTGTTGGTTACAATCCGTACGGCAAGATTCAAATGGAAATGGCCGT 2650130 Query 70621 TTA 70623 || Sbjct 2650129 ATA 2650127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740984603128280