Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 4e-12 >seq3 Length=21835025 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| | || ||||| || || ||||||||||| ||||| || | || ||| Sbjct 1955468 ACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGACCATCTTCC 1955409 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | |||||| || || || | ||| ||||| || | ||| |||||||| || || | Sbjct 1955408 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGA 1955349 Query 33281 ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 ||| ||| || || | | ||| || ||| || | || |||||||| || || Sbjct 1955348 ATCTTAGCC---TTCACGTTCTCAATGGTATCGGATGGCTCCACCTCCAGAGTGATGGTC 1955292 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || ||||| |||||||| Sbjct 1955291 TTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1955260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318746313273594