Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3 147 5e-30 seq4 114 3e-20 >seq3 Length=21835025 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| ||||| |||||||| | ||| | ||| ||| Sbjct 1955069 AGGACCAGATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAAGTGCGACCATCT 1955010 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| || || || || || || | ||| ||||| || || || ||||| ||||| Sbjct 1955009 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTATCT 1954950 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || || || || | ||||||| ||| || ||||| || || || ||| Sbjct 1954949 TGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAGGGTGATGGTC 1954890 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || | ||||| || || |||||||||||| Sbjct 1954889 TTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTTG 1954854 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||||||||| || || || | || | ||| ||||| ||||| || || Sbjct 1955456 GTAGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGACCATCTTCCAGTTGCTTGCCG 1955397 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || || ||||| || ||||||||||| || || Sbjct 1955396 GCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTC 1955337 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||||| || || ||||| || || || ||||| ||||| || || Sbjct 1955336 ACGTTCTCAATGGTATCGGATGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTC 1955277 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 1955276 TTCACGAAGATTTGCAT 1955260 >seq4 Length=22154029 Score = 114 bits (126), Expect = 3e-20 Identities = 206/293 (70%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 238593 TGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATG 238652 ||||| || |||||| |||| |||| | ||||||||||| ||||||| || ||| Sbjct 611710 TGGAACTCGGCCCAGCTACAGCTGGTGAAGGAGGGCAAAATGCACGGTTTCTTGCGCATG 611769 Query 238653 TATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGA-TATAG 238711 |||||||| |||||||| | |||||||| | | || || | || | |||| ||||| Sbjct 611770 TATTGGGCCAAAAAGATTTTAGAATGGACCGAAACGCCGGAGCAGGCGC-TAGAGTATAG 611828 Query 238712 TAT-TTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGTT 238770 || ||| |||||||||| ||| || || || ||||| || || ||||| |||| Sbjct 611829 CATACTAT-TGAACGATAAGTACAGTCTGGATGGGCGCGATCCGAATGGCTACGTTGGTT 611887 Query 238771 GTATGTGGTCAATATGTGGATTACACGA-TAGGGCATGGTCTGAGAGACCTATATTTGGA 238829 | |||||||| || |||| | ||||| | ||| ||| || | | ||||| || Sbjct 611888 GCATGTGGTCCATCGGTGGCATTCACGACCAAGGC-TGGAAGGAACGCGCGATATTCGGT 611946 Query 238830 AAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGTAAATGC 238882 || || | || ||||| ||| |||| ||| || || ||||| ||||| Sbjct 611947 AAGATTCGCTATATGAACTATCAAGGCTGCAAGCGCAAGTTCGATGTCAATGC 611999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151279599792524