Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 >seq2 Length=4222574 Score = 111 bits (122), Expect = 1e-19 Identities = 178/254 (70%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGA 5299 ||||| ||||| ||||| | || ||||| || || || ||| || || || | Sbjct 534921 CCGGTGGAACCAAATCCTGCTTCTCCGCGTTCAGTATCTGCCAGTTTGTCCACTTCCTCT 534980 Query 5300 ACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACC 5359 | | | || | | |||||||||||||| | ||| || || | || || | ||| ||| Sbjct 534981 AATTCCGGATAGAAGATGCGTTCGCATATGAACTGGGCAATGCGATCGCCATGCTTCACC 535040 Query 5360 TCAAAGTCGCTGTTTCCGA--AGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417 || |||| | || ||||| || || || || || || | ||| || || || || | Sbjct 535041 TCGAAGT--CAGTGTCCGAGTGATTGAAGAGGACAACACCTAAATTTCCGCGATAATCCT 535098 Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477 |||| | |||||| |||||||| |||||||| | || || || || ||||| || |||| Sbjct 535099 CGTCCACAACGCCGGCGCCCACATCGATAAAATTCTTTACGGCCAGCCCGGAGCGCGGTG 535158 Query 5478 CTATGCGTCCGTAG 5491 ||||||| || ||| Sbjct 535159 CTATGCGACCATAG 535172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447705328325360