Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq4 123 1e-23 seq1 107 1e-18 seq962 105 3e-18 seq5 105 3e-18 >seq4 Length=22154029 Score = 123 bits (136), Expect = 1e-23 Identities = 85/96 (89%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCA--AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||||| |||||| | | ||||||||||| |||||||||| ||||||||||||||| Sbjct 13061075 AATTAAAAAAAAAAAAGCAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTAT 13061016 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||| ||||||||||||||||||||| Sbjct 13061015 TAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 13060980 Score = 111 bits (122), Expect = 8e-20 Identities = 88/104 (85%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||| ||| ||| | |||||||| || ||||||||| |||||||||| ||||||| Sbjct 17499521 AAAAATA-AATACAAAAAAAATCTGATCATGGCCCATGGGGGGATCGAACCCGCGACCTT 17499463 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||||||| |||| |||||||||||||||| Sbjct 17499462 CGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCCG 17499419 Score = 109 bits (120), Expect = 3e-19 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| ||| | |||| |||| | | |||||||||| |||||||||| ||||||||| Sbjct 13066020 AAAAATAAATTTAA--AAAATTGCATTTGGCCCATGGGGGGATCGAACCCGCGACCTTCG 13065963 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||| ||||||||||||||| Sbjct 13065962 CGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 13065922 >seq1 Length=24697304 Score = 107 bits (118), Expect = 1e-18 Identities = 79/92 (86%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 11440 TAATAAAAAAT--CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 ||| ||||||| | |||||||||| |||||||||| |||||||||||||||||| Sbjct 5012079 TAACAAAAAATTTCGTCTTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAG 5012138 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||| ||||||||||||||| Sbjct 5012139 CACGACGCTCTAACCAGCTGAGCTAATGGGCC 5012170 >seq962 Length=9828 Score = 105 bits (116), Expect = 3e-18 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 || || ||||| | | |||||||||| |||||||||| || ||||||||||||||| Sbjct 4856 ATAAAAAAAAAGTATAGTTGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAG 4915 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||| ||||||||||||||| Sbjct 4916 CACGACGCTCTAACCAGCTGAGCTAATGGGCC 4947 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| || |||||||||||||||||||||||||| |||| | Sbjct 4287 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 4228 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 4227 TGAGCTAATGGGCC 4214 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| || |||||||||||||||||||||||||| |||| | Sbjct 4460 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 4401 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 4400 TGAGCTAATGGGCC 4387 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| || |||||||||||||||||||||||||| |||| | Sbjct 5048 TGGCCCATGGGGGGATCGAACCCGCGGCCTTCGCGTTATTAGCACGACGCTCTAACCAGC 5107 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 5108 TGAGCTAATGGGCC 5121 >seq5 Length=1309517 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 429479 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 429420 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 429419 TGAGCTAATGGGCCG 429405 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261465535701028