Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq2 132 4e-26
seq3 98.7 9e-16
seq6 95.1 1e-14
>seq2
Length=4222574
Score = 132 bits (146), Expect = 4e-26
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||| ||||||||||| || ||||| || | ||| || ||| | |||| ||||||
Sbjct 180278 CACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGATAGAGTGCGTCCATCCTC 180219
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|||||| || ||| ||||||| | | ||||||||||| || || ||||||||||| |
Sbjct 180218 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATCCCTTCTTTGTCCTG 180159
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || |||||||| ||| ||||||| | | ||||| || | || ||||| ||
Sbjct 180158 GATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAATGGTCTT 180099
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || |||||||| || ||||| |||||
Sbjct 180098 GCCGGTGAGAGTTTTMACGAAGATTTGCAT 180069
>seq3
Length=21835025
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
||||| || | |||||| ||||| || | || |||||| || ||| ||| |||
Sbjct 1955468 ACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGACCATCTTCC 1955409
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|| || || ||| | ||||| | | ||||||||||| ||||| ||||| ||||| | |
Sbjct 1955408 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGA 1955349
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||| ||| | | || || | | || || || | |||||||| ||
Sbjct 1955348 ATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCCACCTCCAGAGTGATGGTCTTG 1955289
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || || ||||| ||||| |||||
Sbjct 1955288 CCAGTCAGGGTCTTCACGAAGATTTGCAT 1955260
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| ||||| || || ||| | ||||| | | ||||||||||| ||||| ||||| ||
Sbjct 1955013 ATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTT 1954954
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | ||| || ||||||||| | | || || | | || || || | |||||
Sbjct 1954953 ATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAGGGTGAT 1954894
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| ||||| || | |||||| || |||||||||||
Sbjct 1954893 GGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCAT 1954858
>seq6
Length=21059900
Score = 95.1 bits (104), Expect = 1e-14
Identities = 100/132 (76%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||||||| |||||||| ||||| || | ||| || ||| || |||| ||||||
Sbjct 7471154 CACCAAGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGCCCATCCTC 7471213
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|||||| || || | ||||| || | ||||||||||| |||||||| || ||||| |
Sbjct 7471214 CAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTG 7471273
Query 94918 AATTTTTGCCTT 94929
|| || |||||
Sbjct 7471274 GATCTTGGCCTT 7471285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448246073887080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |