Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2 551 7e-152 seq4 251 9e-62 >seq2 Length=4222574 Score = 551 bits (610), Expect = 7e-152 Identities = 1272/1899 (67%), Gaps = 28/1899 (1%) Strand=Plus/Minus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 |||||||| || | | | || ||||| || || ||||| ||||| || || || ||| Sbjct 4216020 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 4215961 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || |||| |||||||| || |||| ||| |||| | || || |||| Sbjct 4215960 CCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGGTTCAGCTACG 4215901 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || ||||| | ||| ||||||||||| || |||||||| ||||| || ||||||||||| Sbjct 4215900 TGAATATTGAAAGACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTTATA 4215841 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 62233 | | || || ||| ||||| | |||||||| || || | | | |||| | | Sbjct 4215840 GTTGATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATTTCCTTCGGAATT 4215781 Query 62234 GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291 | || |||| || || || |||| || || || || ||| || ||||| |||| | Sbjct 4215780 GATTCAATATTTTGTATTGAACCACGATTTGATATTATTTGATTTTTCATCTCGTCATCC 4215721 Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351 || || | ||||||||| | | || | || | || |||||||||||||| || Sbjct 4215720 CACAAATCAAGTTCGGTTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCGCCG 4215661 Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411 |||||||||| | |||||||| || ||||| || || | ||||||||| || ||| Sbjct 4215660 GACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTGTTGCCC 4215601 Query 62412 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62471 | ||||| ||||| ||||| || ||||| || || || | |||| |||||| | ||| Sbjct 4215600 ATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACACC- 4215542 Query 62472 TATGTTCTGATTTT-ATCTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 62529 ||||| | | | || ||||| || ||||| | ||||||||| | || | | Sbjct 4215541 -ATGTTGCGCTATCGATTTTTTAAGAACATCCCAGTCCCAAAGATCTGTTGG--CGATTT 4215485 Query 62530 NNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGT 62586 | || | ||| || || || | | || ||| ||||| || || | Sbjct 4215484 ATTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACT-TCCAACATAAGTCTCAT 4215426 Query 62587 ATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTT 62646 ||||||| || | | ||||| |||||| || || || | || || || || || |||| Sbjct 4215425 ATGGTCCATCTCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTT 4215366 Query 62647 CGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAA 62706 |||| |||| || ||||| | ||| || | || || | | ||| | | | Sbjct 4215365 CGAAAATCTGCTGATTTAAAAGAAATGCATCATGACTTTCGTAAGAATACCGCATTAATA 4215306 Query 62707 TAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 62766 | ||||||||||| || ||||| || ||||| || ||||| | || | ||| || Sbjct 4215305 TTAACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATT 4215246 Query 62767 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAA 62826 ||| ||||||||| | ||| || ||||| ||||| || ||||| || | ||| | || Sbjct 4215245 TTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTAA 4215186 Query 62827 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAACA 62883 | ||| || || || || || ||| ||| | | ||| | ||||||| Sbjct 4215185 CAATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACA 4215126 Query 62884 TGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTA 62943 | || | |||| || |||| |||||| || |||| |||| | | | ||| | | Sbjct 4215125 TATTAAGTGCAATTGACGCCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAA 4215066 Query 62944 TTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTT 63003 ||| || ||||| |||||||| || || |||||||| | ||||||||| || || ||| Sbjct 4215065 CTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTC 4215006 Query 63004 TGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAA 63063 ||||||||| ||||||| | | ||| | || ||||| || || | |||||||| |||| Sbjct 4215005 TGTTACACGAATCCTTAAATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAA 4214946 Query 63064 TCGCTTTCCAGACGACTCGAGCCTTTATTA-TAGATTTGTATCTCCTTTCTCTTTCGTAT 63122 | || ||| | | ||||||| || | | |||| | ||||| || ||| ||| Sbjct 4214945 TGGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCGCTCGTCCTT-CTTGTTCATAT 4214887 Query 63123 AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCC 63182 |||| | ||| || || || |||||||||| | |||||||||| || Sbjct 4214886 TTGATATAAAGGTTTTCAAAATCTTCACCCCAAACATCTGGAAGGCCAGGACATTTATGT 4214827 Query 63183 GGACACATCAACGACCACTCTCCGTCATC--CTTCA-CTCGTTTCATAAAGAGATCAGGA 63239 |||||||| | ||||| ||| |||| ||||| | ||||||||||| ||||||||| Sbjct 4214826 GGACACATTAGTGACCAATCT---TCATTGGCTTCAACACGTTTCATAAAAAGATCAGGA 4214770 Query 63240 ATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA 63299 ||||| | || | ||| ||||| | | | ||||||||| ||||| ||||| |||||| Sbjct 4214769 ATCCACAATGCAAAAAACAGATCGCGCGCCCGATGTTCCTCCTTTCCAGTATTTTTTTTA 4214710 Query 63300 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 63359 || || | || | | | ||| || ||||| || || ||||| || || | ||||| Sbjct 4214709 AGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGCTCCA 4214650 Query 63360 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63419 || | ||| || |||||||| | || | || |||||| ||||||| |||||| Sbjct 4214649 GGTCTTTTACCACCGCCCTGATCGACATAACGTGCCACATTATTAAAAACTCTTAACATT 4214590 Query 63420 GG-AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT 63478 || | |||| || ||||| |||| || || || | || | |||| | || ||||| Sbjct 4214589 GGTACTAAT-CCATTTGAAGTACCGTTCGTTCCACAAATTGATGTTCCTTTAGCTCGAAT 4214531 Query 63479 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63538 | || || || || || |||||| || || || | ||||||| | | | Sbjct 4214530 ACAGTGAACATTCAGTCCAATGCCACCTGCCGACTTTGAAATCATTGCGCATTGCTCAAC 4214471 Query 63539 CGTGTCATAGATACCCTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACA 63597 | | | | || || || || |||| | || |||||| ||||| || ||||| Sbjct 4214470 TGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAG-AGAAAGCATGAAGACA 4214412 Query 63598 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 63657 ||| |||| | || | ||| ||| | || || || || || ||||| | | Sbjct 4214411 ATTGTGGACGGTTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCT 4214352 Query 63658 CAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTG 63717 |||| || | |||||| || || | || || || ||||| ||| || |||| | Sbjct 4214351 CAGATAGCAAATTGTAGGTTTCCACTGCAGAATCAATATCTTCGCCATGTATACCTATAG 4214292 Query 63718 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGT 63777 | |||||||||| || ||||| |||||||| | || || |||||||| | ||||| Sbjct 4214291 CAACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAGT 4214232 Query 63778 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 63837 | || || | || ||||| ||||| ||||| ||| ||| || || || || |||| Sbjct 4214231 AAGACCGCTCAAGTGTCTTAAATCCAAAGTAGTTATATCCAAAATCACGATCATATATAA 4214172 Query 63838 TAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATAT 63876 || | ||||| | |||| || || |||||||||| Sbjct 4214171 TAGCAGAGTTCAAGCGATCCGAATTATTTTTAACTATAT 4214133 >seq4 Length=22154029 Score = 251 bits (278), Expect = 9e-62 Identities = 570/848 (67%), Gaps = 17/848 (2%) Strand=Plus/Plus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||| |||| ||||| ||| ||||| || || || |||||||| |||||||| || Sbjct 3240309 GACGTAACGCCCATACGTTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCA 3240368 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 33117 |||| || || | |||||||| || ||||| | ||| || ||||| || Sbjct 3240369 TCCAGCGAGATCATCTCCATGAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACA 3240428 Query 33118 CCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33177 || | ||| | || | |||||| || ||||| |||||| ||||| | ||||| Sbjct 3240429 CCGAGTTCCACCAGCAGACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAA 3240488 Query 33178 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 33237 ||||| || || | || || || ||||| | || ||||| ||||| ||||||| || Sbjct 3240489 TTCATGCCAATCAAATTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACA 3240548 Query 33238 GCATCTGTTATAATA--GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAA 33295 ||||| | ||||| ||| ||| | | | | || | |||| ||||| | Sbjct 3240549 GCATCCGAGATAATCTCGATGATACGCTCCCGGC--TGGGCCGTTGCACCAAATGCCGGA 3240606 Query 33296 ACATCAA-ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||||| ||| || || || || |||| |||||||| | || | || ||||| Sbjct 3240607 ACATCATGACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAG 3240665 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 ||||| || || ||||| || |||||||| || |||||||| || || || || ||| Sbjct 3240666 AACGTCAGACCTGGCATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCG 3240725 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCGCT 33473 ||||||||||| || || |||||||| || |||| |||||| ||| | || ||| Sbjct 3240726 CTGAAGAAGATTCCCTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCC 3240785 Query 33474 GTC-ATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531 || ||| ||||| | |||||||| ||||| || ||| ||||| ||||| Sbjct 3240786 TTCGATGAAATCCAAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCA 3240845 Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591 |||||||| || ||||| | ||| | ||| ||| ||| |||||||||| | Sbjct 3240846 ATGGCATTGAACAGATAATCCCTTTGCTGTGGATCCCTAATATATGTATCGATCAGCACG 3240905 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 || ||||| ||||| || | || || ||||| || ||||| || |||||||| | ||| Sbjct 3240906 CTGTACATCTCCGAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCT 3240965 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711 ||||| || || || || | || || || ||| ||| ||||| || || || || Sbjct 3240966 TCGGTTATTTGCACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCG 3241025 Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33771 ||| ||||| || || | ||||| ||||| | |||| | | |||| | Sbjct 3241026 GAGGCGGCAAAGAAGGCGAGCACATGCGAGATAAAGTGACGCTCGT----TATCAGTTAA 3241081 Query 33772 ----TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827 ||| || | ||| || || | ||| || || ||||| ||||| ||||| || Sbjct 3241082 ACGTGCCCAGTCCGCCAAATCCTTGGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGC 3241141 Query 33828 CTCTGCCT 33835 ||| |||| Sbjct 3241142 CTCGGCCT 3241149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622884492577480