Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq2 551 7e-152
seq4 251 9e-62
>seq2
Length=4222574
Score = 551 bits (610), Expect = 7e-152
Identities = 1272/1899 (67%), Gaps = 28/1899 (1%)
Strand=Plus/Minus
Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054
|||||||| || | | | || ||||| || || ||||| ||||| || || || |||
Sbjct 4216020 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 4215961
Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114
|| |||| |||||||| || |||| ||| |||| | || || ||||
Sbjct 4215960 CCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGGTTCAGCTACG 4215901
Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174
|| ||||| | ||| ||||||||||| || |||||||| ||||| || |||||||||||
Sbjct 4215900 TGAATATTGAAAGACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTTATA 4215841
Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 62233
| | || || ||| ||||| | |||||||| || || | | | |||| | |
Sbjct 4215840 GTTGATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATTTCCTTCGGAATT 4215781
Query 62234 GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291
| || |||| || || || |||| || || || || ||| || ||||| |||| |
Sbjct 4215780 GATTCAATATTTTGTATTGAACCACGATTTGATATTATTTGATTTTTCATCTCGTCATCC 4215721
Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351
|| || | ||||||||| | | || | || | || |||||||||||||| ||
Sbjct 4215720 CACAAATCAAGTTCGGTTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCGCCG 4215661
Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411
|||||||||| | |||||||| || ||||| || || | ||||||||| || |||
Sbjct 4215660 GACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTGTTGCCC 4215601
Query 62412 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62471
| ||||| ||||| ||||| || ||||| || || || | |||| |||||| | |||
Sbjct 4215600 ATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACACC- 4215542
Query 62472 TATGTTCTGATTTT-ATCTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 62529
||||| | | | || ||||| || ||||| | ||||||||| | || | |
Sbjct 4215541 -ATGTTGCGCTATCGATTTTTTAAGAACATCCCAGTCCCAAAGATCTGTTGG--CGATTT 4215485
Query 62530 NNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGT 62586
| || | ||| || || || | | || ||| ||||| || || |
Sbjct 4215484 ATTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACT-TCCAACATAAGTCTCAT 4215426
Query 62587 ATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTT 62646
||||||| || | | ||||| |||||| || || || | || || || || || ||||
Sbjct 4215425 ATGGTCCATCTCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTT 4215366
Query 62647 CGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAA 62706
|||| |||| || ||||| | ||| || | || || | | ||| | | |
Sbjct 4215365 CGAAAATCTGCTGATTTAAAAGAAATGCATCATGACTTTCGTAAGAATACCGCATTAATA 4215306
Query 62707 TAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 62766
| ||||||||||| || ||||| || ||||| || ||||| | || | ||| ||
Sbjct 4215305 TTAACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATT 4215246
Query 62767 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAA 62826
||| ||||||||| | ||| || ||||| ||||| || ||||| || | ||| | ||
Sbjct 4215245 TTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTAA 4215186
Query 62827 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAACA 62883
| ||| || || || || || ||| ||| | | ||| | |||||||
Sbjct 4215185 CAATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACA 4215126
Query 62884 TGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTA 62943
| || | |||| || |||| |||||| || |||| |||| | | | ||| | |
Sbjct 4215125 TATTAAGTGCAATTGACGCCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAA 4215066
Query 62944 TTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTT 63003
||| || ||||| |||||||| || || |||||||| | ||||||||| || || |||
Sbjct 4215065 CTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTC 4215006
Query 63004 TGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAA 63063
||||||||| ||||||| | | ||| | || ||||| || || | |||||||| ||||
Sbjct 4215005 TGTTACACGAATCCTTAAATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAA 4214946
Query 63064 TCGCTTTCCAGACGACTCGAGCCTTTATTA-TAGATTTGTATCTCCTTTCTCTTTCGTAT 63122
| || ||| | | ||||||| || | | |||| | ||||| || ||| |||
Sbjct 4214945 TGGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCGCTCGTCCTT-CTTGTTCATAT 4214887
Query 63123 AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCC 63182
|||| | ||| || || || |||||||||| | |||||||||| ||
Sbjct 4214886 TTGATATAAAGGTTTTCAAAATCTTCACCCCAAACATCTGGAAGGCCAGGACATTTATGT 4214827
Query 63183 GGACACATCAACGACCACTCTCCGTCATC--CTTCA-CTCGTTTCATAAAGAGATCAGGA 63239
|||||||| | ||||| ||| |||| ||||| | ||||||||||| |||||||||
Sbjct 4214826 GGACACATTAGTGACCAATCT---TCATTGGCTTCAACACGTTTCATAAAAAGATCAGGA 4214770
Query 63240 ATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA 63299
||||| | || | ||| ||||| | | | ||||||||| ||||| ||||| ||||||
Sbjct 4214769 ATCCACAATGCAAAAAACAGATCGCGCGCCCGATGTTCCTCCTTTCCAGTATTTTTTTTA 4214710
Query 63300 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 63359
|| || | || | | | ||| || ||||| || || ||||| || || | |||||
Sbjct 4214709 AGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGCTCCA 4214650
Query 63360 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63419
|| | ||| || |||||||| | || | || |||||| ||||||| ||||||
Sbjct 4214649 GGTCTTTTACCACCGCCCTGATCGACATAACGTGCCACATTATTAAAAACTCTTAACATT 4214590
Query 63420 GG-AATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT 63478
|| | |||| || ||||| |||| || || || | || | |||| | || |||||
Sbjct 4214589 GGTACTAAT-CCATTTGAAGTACCGTTCGTTCCACAAATTGATGTTCCTTTAGCTCGAAT 4214531
Query 63479 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63538
| || || || || || |||||| || || || | ||||||| | | |
Sbjct 4214530 ACAGTGAACATTCAGTCCAATGCCACCTGCCGACTTTGAAATCATTGCGCATTGCTCAAC 4214471
Query 63539 CGTGTCATAGATACCCTCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACA 63597
| | | | || || || || |||| | || |||||| ||||| || |||||
Sbjct 4214470 TGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAG-AGAAAGCATGAAGACA 4214412
Query 63598 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 63657
||| |||| | || | ||| ||| | || || || || || ||||| | |
Sbjct 4214411 ATTGTGGACGGTTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCT 4214352
Query 63658 CAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTG 63717
|||| || | |||||| || || | || || || ||||| ||| || |||| |
Sbjct 4214351 CAGATAGCAAATTGTAGGTTTCCACTGCAGAATCAATATCTTCGCCATGTATACCTATAG 4214292
Query 63718 CGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGT 63777
| |||||||||| || ||||| |||||||| | || || |||||||| | |||||
Sbjct 4214291 CAACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAGT 4214232
Query 63778 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 63837
| || || | || ||||| ||||| ||||| ||| ||| || || || || ||||
Sbjct 4214231 AAGACCGCTCAAGTGTCTTAAATCCAAAGTAGTTATATCCAAAATCACGATCATATATAA 4214172
Query 63838 TAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATAT 63876
|| | ||||| | |||| || || ||||||||||
Sbjct 4214171 TAGCAGAGTTCAAGCGATCCGAATTATTTTTAACTATAT 4214133
>seq4
Length=22154029
Score = 251 bits (278), Expect = 9e-62
Identities = 570/848 (67%), Gaps = 17/848 (2%)
Strand=Plus/Plus
Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057
||| |||| ||||| ||| ||||| || || || |||||||| |||||||| ||
Sbjct 3240309 GACGTAACGCCCATACGTTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCA 3240368
Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 33117
|||| || || | |||||||| || ||||| | ||| || ||||| ||
Sbjct 3240369 TCCAGCGAGATCATCTCCATGAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACA 3240428
Query 33118 CCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33177
|| | ||| | || | |||||| || ||||| |||||| ||||| | |||||
Sbjct 3240429 CCGAGTTCCACCAGCAGACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAA 3240488
Query 33178 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 33237
||||| || || | || || || ||||| | || ||||| ||||| ||||||| ||
Sbjct 3240489 TTCATGCCAATCAAATTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACA 3240548
Query 33238 GCATCTGTTATAATA--GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAA 33295
||||| | ||||| ||| ||| | | | | || | |||| ||||| |
Sbjct 3240549 GCATCCGAGATAATCTCGATGATACGCTCCCGGC--TGGGCCGTTGCACCAAATGCCGGA 3240606
Query 33296 ACATCAA-ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|||||| ||| || || || || |||| |||||||| | || | || |||||
Sbjct 3240607 ACATCATGACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAG 3240665
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
||||| || || ||||| || |||||||| || |||||||| || || || || |||
Sbjct 3240666 AACGTCAGACCTGGCATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCG 3240725
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA-ACCGGCGCT 33473
||||||||||| || || |||||||| || |||| |||||| ||| | || |||
Sbjct 3240726 CTGAAGAAGATTCCCTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCC 3240785
Query 33474 GTC-ATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531
|| ||| ||||| | |||||||| ||||| || ||| ||||| |||||
Sbjct 3240786 TTCGATGAAATCCAAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCA 3240845
Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591
|||||||| || ||||| | ||| | ||| ||| ||| |||||||||| |
Sbjct 3240846 ATGGCATTGAACAGATAATCCCTTTGCTGTGGATCCCTAATATATGTATCGATCAGCACG 3240905
Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651
|| ||||| ||||| || | || || ||||| || ||||| || |||||||| | |||
Sbjct 3240906 CTGTACATCTCCGAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCT 3240965
Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCA 33711
||||| || || || || | || || || ||| ||| ||||| || || || ||
Sbjct 3240966 TCGGTTATTTGCACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCG 3241025
Query 33712 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33771
||| ||||| || || | ||||| ||||| | |||| | | |||| |
Sbjct 3241026 GAGGCGGCAAAGAAGGCGAGCACATGCGAGATAAAGTGACGCTCGT----TATCAGTTAA 3241081
Query 33772 ----TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGC 33827
||| || | ||| || || | ||| || || ||||| ||||| ||||| ||
Sbjct 3241082 ACGTGCCCAGTCCGCCAAATCCTTGGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGC 3241141
Query 33828 CTCTGCCT 33835
||| ||||
Sbjct 3241142 CTCGGCCT 3241149
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622884492577480
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