Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2 188 7e-43 seq4 170 2e-37 seq3 87.8 2e-12 >seq2 Length=4222574 Score = 188 bits (208), Expect = 7e-43 Identities = 719/1108 (65%), Gaps = 37/1108 (3%) Strand=Plus/Minus Query 147450 TGCTGATTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGTA 147509 || || || || |||||| | ||||| |||| |||| || | ||| | || |||| Sbjct 4215687 TGATGGTTTACTACTTGAAATTCGCCGGACAATACTCGTCTTGTGTAAATGTTTGAAGTA 4215628 Query 147510 AACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTAA 147569 | |||||||||||||| ||||| || | || |||||||| | ||| || |||||| | Sbjct 4215627 TAAGGCTCGAACGACTCATTGTTGCCCATTATTTGTGCAGTAGATGCTGTAGGCATGGGA 4215568 Query 147570 GCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATTTCTCGCTTAAGCTCGTCCCAG 147629 |||| | ||| ||||| | | || || || || | ||||| | |||||| Sbjct 4215567 GCAACGAGTAAAGAATTTCTGACACCATGTTGCGCTATCGATTTTTTAAGAACATCCCAG 4215508 Query 147630 TTCCAAAGATCATT---CGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAA 147686 | ||||||||| | ||||| ||||||||| |||| |||| |||| ||| Sbjct 4215507 TCCCAAAGATCTGTTGGCGATT------TATTCCACATATCATACTGCAAAATTCCTTTG 4215454 Query 147687 CTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTT 147746 ||| | || |||||| | |||| || |||| ||| | || ||||| ||| | | Sbjct 4215453 CTTACTGGACTTCCAACATAAGTCTCATATGGTCCATCTCTTTGAGCTAATTC-ACA-GC 4215396 Query 147747 TGACTT--AGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCT 147804 || ||| || || ||||| || |||||||| |||||| | ||||||| || | Sbjct 4215395 TGGCTTCCAGAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAAAAGAAATGCAT 4215336 Query 147805 CTTGGCTGTCGTAGGGCATATC-CAAAATGGCGAACGTATCCGCAAGTCCTTGAATACCG 147863 | || || ||||| | ||| | || | |||| ||||||| ||||| | || Sbjct 4215335 CATGACTTTCGTA-AGAATACCGCATTAATATTAACGCGTCCGCAAACCCTTGGACTCCA 4215277 Query 147864 ATACCGATGGGTCGGTGTCTGAAATTCGATGCTTGAGCGCTAGCCAACGGATAAAAATTC 147923 || || || || ||||| | ||||| ||| || ||| | ||| || || |||| Sbjct 4215276 ATTCCAATAGGACGGTGGCGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTT 4215217 Query 147924 AAGTCGATAATTTTATTGAGATTATTGGTAACCACTCTAGATACATTGTAGAGCGACTTA 147983 | || || ||||| || | || || ||||| | | ||| ||| | | ||| ||| Sbjct 4215216 ATATCAATTATTTTGTTTAAGTTTTTCGTAACAATTTTAGTTACTTCTTTAAGCTTTTTA 4215157 Query 147984 AAGTC-GAAGCTTTTAAACTGTTTATTGGCAAAATTATTTACGGCAATCGAGGCCAAGTT 148042 ||||| | | |||| | | | |||| |||| | ||||| || ||||| || Sbjct 4215156 AAGTCATACGATTTT----TCATGCGTCACAAACATATTAAGTGCAATTGACGCCAAATT 4215101 Query 148043 ACACACGGCCGTTTC-TCGATTGTCGCT--ATATTGAACGATTTCGGCACACAGATTGCT 148099 |||||| || |||| || || ||| ||| | ||| ||||| | |||||||| || Sbjct 4215100 ACACACAGCTATTTCATC---TGGTGCTGAATACTCAACTATTTCTGTGCACAGATTACT 4215044 Query 148100 GTTTCGAATCACTCCCTCGtttttttGATTATTTTTATTGTTA-ACGTGATCTTTAAACA 148158 | | || ||| | |||| ||| || |||| ||||| ||| ||| ||||| | Sbjct 4215043 GCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACG-AATCCTTAAATA 4214985 Query 148159 TCATGTATGGAGCTCCGGTCTCGACTTGAGTCTCAATAATTTTTCTATGAAGATCTAAAG 148218 |||||| || | || ||||| ||||||| || ||||| |||| | || Sbjct 4214984 ACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAATGGCAAACCAAAGAGATTGAG 4214925 Query 148219 CCGAAATTTGTTTTTTAAACTTG-CCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAAT 148277 || ||| | || || | ||||| || || || ||||||| || || Sbjct 4214924 CCTTAATAACTCGATT-CGCTCGTCCTTCTTGTTCATATTTGATATAAAGGTTTTCAAAA 4214866 Query 148278 TCTTGGCCATAGCAATCGTTTAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTC 148337 |||| || | ||| | || ||||| | | || ||||| | |||||| | Sbjct 4214865 TCTTCACCCCAAACATCTGGAAGGCCAGGACATTTATGTGGACACATTAGTGACCAAT-- 4214808 Query 148338 CCTC-CTGTCTT-TACCCTCTTCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGAT 148395 | || || ||| || | |||||||| |||||||| |||||| ||||||| |||| Sbjct 4214807 CTTCATTGGCTTCAACACGTTTCATAAAAAGATCAGGAATCCACAATGCAAAAAACAGAT 4214748 Query 148396 CGCGAGCCTTCATATCCTCGGCACCCATATTGCGCTTTAGATCCaaaaaagtaaaaaCGT 148455 |||| ||| ||||| || |||| || || |||||||| || || | Sbjct 4214747 CGCGCGCCCGATGTTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACAT 4214688 Query 148456 CTGCGTGCCAAGGCTCGATGTATACGGTCATGGCGCCTTTCCTTTT---ACCTCCTTGAT 148512 ||| |||||||||||| | ||| | | | || || ||||| ||| || |||| Sbjct 4214687 CTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGAT 4214628 Query 148513 CGACATGGCGTAGCATGCTATTAAAAAC 148540 |||||| ||| || |||||||||| Sbjct 4214627 CGACATAACGTGCCACATTATTAAAAAC 4214600 >seq4 Length=22154029 Score = 170 bits (188), Expect = 2e-37 Identities = 212/288 (74%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 71687 TGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCACGGATACCTACGCATG 71746 ||||| | || |||| |||||| || ||||| ||||| ||||| | | | |||||| Sbjct 611710 TGGAACTCGGCCCAGCTACAGCTGGTGAAGGAGGGCAAAATGCACGGTTTCTTGCGCATG 611769 Query 71747 TACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTCGAGTATTCT 71806 || ||||||||||||||| | || ||||| |||| || ||||||||||| |||||| Sbjct 611770 TATTGGGCCAAAAAGATTTTAGAATGGACCGAAACGCCGGAGCAGGCGCTAGAGTATAGC 611829 Query 71807 AT-TTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTATGTCGGTTG 71865 || ||| | ||||||| |||||||| || || |||||||| || || || || ||||| Sbjct 611830 ATACTAT-TGAACGATAAGTACAGTCTGGATGGGCGCGATCCGAATGGCTACGTTGGTTG 611888 Query 71866 CATGTGGAGCATTTGCGGTCTTCACGATAGAAGCTTTTTAGAACGTCAAGTGTTTGGTAA 71925 ||||||| ||| | || ||||||| | ||| ||||| | || ||||| Sbjct 611889 CATGTGGTCCATCGGTGGCATTCACGACCAAGGCTGGAAGGAACGCGCGATATTCGGTAA 611948 Query 71926 AATTCGCTATATGAATCGTAATGGTTGCGAACGCAAGTTCAATGTGAA 71973 |||||||||||||| | | || ||| | ||||||||| |||| || Sbjct 611949 GATTCGCTATATGAACTATCAAGGCTGCAAGCGCAAGTTCGATGTCAA 611996 >seq3 Length=21835025 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||||||||| | || || ||||| || || ||||| | |||||| | || | || | Sbjct 1954854 CAAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTTGAGCC 1954913 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 ||| ||||| ||| | ||||| |||||| || || ||||| || || || || Sbjct 1954914 TTCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAAGGCATTCCCCCAGA 1954973 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||| || | || || | || |||||| ||||| ||||||| | | | | ||||| Sbjct 1954974 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTTTGTCTGACTA 1955033 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || || || || || ||||||||||||| Sbjct 1955034 CAATATCCAGAAGGAGTCGACCCTCCATCTGGTCCT 1955069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478614216646160