Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2 190 5e-43 >seq2 Length=4222574 Score = 190 bits (210), Expect = 5e-43 Identities = 585/892 (66%), Gaps = 26/892 (3%) Strand=Plus/Plus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 || ||||| | || | ||| | || |||||| || |||||||||||||||| ||||| Sbjct 4214243 ATAAATGGAAAAATAGCAGAAAGACCACAGCATTTGCTAATGCGTGTTGCTATAGGTATA 4214302 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC 363549 ||| || ||| ||||| | || | ||||| || || | ||| || ||| | || Sbjct 4214303 CATGGCGAAGATATTGATTCTGCAGTGGAAACCTACAATTTGCTATCTGAGCGTTTTTTT 4214362 Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAA---TCCACAGATGTCTTCT 363606 || || || | ||||| | | ||||| | | || |||||| ||||||| Sbjct 4214363 ACTCATGCATCACCAACTCTTT---TTGCTGCAGCCACAAACCGTCCACAATTGTCTTCA 4214419 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 |||||||| ||| || | ||||| || || || || ||| | || || || | Sbjct 4214420 TGCTTTCTCTTAACTATAGTGTCTGATTCAATTGAAGGGATTTTTAAATCAGTTGAGCAA 4214479 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTG 363724 || || | ||||| ||| ||||| || ||||| || || | ||| | |||| | Sbjct 4214480 TGCGCAATGATTTCAAAGTCGGCAGGTGGCATTGGACTGAAT--GTTCACTGTATTCGAG 4214537 Query 363725 C--ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGC 363781 | | ||||| | ||| | || || | | ||| || ||||| | || || ||| Sbjct 4214538 CTAAAGGAACA--TCAATTTGTGGAAC-GAACGGTACTTCAAATGGATTAGTACCAATGT 4214594 Query 363782 TTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGG 363841 | | || ||| | ||| || | || ||||| ||||| || || || | || | Sbjct 4214595 TAAGAGTTTTTAATAATGTGGCACGTTATGTCGATCAGGGCGGTGGTAAAAGACCTGGAG 4214654 Query 363842 CGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGA 363901 | |||||||| || | |||||| || | ||| | || || ||| | || || | Sbjct 4214655 CATTTGCTATTTACTTAGAGCCTTGGCACTCAGATGTCTTCGAATTTTTGGACCTTAAAA 4214714 Query 363902 AAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTG 363961 |||| || ||||| |||||| || || || |||||||| | |||| | ||| || ||| Sbjct 4214715 AAAATACTGGAAAGGAGGAACATCGGGCGCGCGATCTGTTTTTTGCATTGTGGATTCCTG 4214774 Query 363962 ACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAAT 364021 | | ||||||||| || || || || | | |||||||||| | || ||||| ||| Sbjct 4214775 ATCTTTTTATGAAACGTGTTGAAGCCAATGAAGATTGGTCACTAATGTGTCCACATAAAT 4214834 Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATG--TTGCTCTATACGAAAAGTATGA 364079 |||| || ||| | ||||| |||||||| || | || || |||| ||| ||||| Sbjct 4214835 GTCCTGGCCTTCCAGATGTTTGGGGTGAAGATTTTGAAAACCTTTATATCAAA--TATGA 4214892 Query 364080 ATCGGAGGGAAAGGC---TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCAT 364136 | || ||| || ||| || ||| || || || ||||||||||| || Sbjct 4214893 ACAAGAAGGACGAGCGAATCG--AG-TTATTAAGGCTCAATCTCTTTGGTTTGCCATTAT 4214949 Query 364137 GGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAA 364196 || || || | ||||| || |||||||| ||||| | || |||||||| ||| | || Sbjct 4214950 CGAATCTCAAGTAGAGACGGGTACACCCTACATGTTATTTAAGGATTCGTGTAACAGAAA 4215009 Query 364197 GTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGA 364256 |||||| || | |||| || || | || || || || || || || |||| Sbjct 4215010 AAGCAACCAACAAAATGTTGGAACTATAAAATGCAGTAATCTGTGCACAGAAATAGTTGA 4215069 Query 364257 ATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTT 364308 || | || || || || | || || ||||| | ||||| || || ||| Sbjct 4215070 GTATTCAGCACCAGATGAAATAGCTGTGTGTAATTTGGCGTCAATTGCACTT 4215121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303219121197446