Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq2 190 5e-43
>seq2
Length=4222574
Score = 190 bits (210), Expect = 5e-43
Identities = 585/892 (66%), Gaps = 26/892 (3%)
Strand=Plus/Plus
Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489
|| ||||| | || | ||| | || |||||| || |||||||||||||||| |||||
Sbjct 4214243 ATAAATGGAAAAATAGCAGAAAGACCACAGCATTTGCTAATGCGTGTTGCTATAGGTATA 4214302
Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTC 363549
||| || ||| ||||| | || | ||||| || || | ||| || ||| | ||
Sbjct 4214303 CATGGCGAAGATATTGATTCTGCAGTGGAAACCTACAATTTGCTATCTGAGCGTTTTTTT 4214362
Query 363550 ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAA---TCCACAGATGTCTTCT 363606
|| || || | ||||| | | ||||| | | || |||||| |||||||
Sbjct 4214363 ACTCATGCATCACCAACTCTTT---TTGCTGCAGCCACAAACCGTCCACAATTGTCTTCA 4214419
Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666
|||||||| ||| || | ||||| || || || || ||| | || || || |
Sbjct 4214420 TGCTTTCTCTTAACTATAGTGTCTGATTCAATTGAAGGGATTTTTAAATCAGTTGAGCAA 4214479
Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTG 363724
|| || | ||||| ||| ||||| || ||||| || || | ||| | |||| |
Sbjct 4214480 TGCGCAATGATTTCAAAGTCGGCAGGTGGCATTGGACTGAAT--GTTCACTGTATTCGAG 4214537
Query 363725 C--ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGC 363781
| | ||||| | ||| | || || | | ||| || ||||| | || || |||
Sbjct 4214538 CTAAAGGAACA--TCAATTTGTGGAAC-GAACGGTACTTCAAATGGATTAGTACCAATGT 4214594
Query 363782 TTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGG 363841
| | || ||| | ||| || | || ||||| ||||| || || || | || |
Sbjct 4214595 TAAGAGTTTTTAATAATGTGGCACGTTATGTCGATCAGGGCGGTGGTAAAAGACCTGGAG 4214654
Query 363842 CGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGA 363901
| |||||||| || | |||||| || | ||| | || || ||| | || || |
Sbjct 4214655 CATTTGCTATTTACTTAGAGCCTTGGCACTCAGATGTCTTCGAATTTTTGGACCTTAAAA 4214714
Query 363902 AAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTG 363961
|||| || ||||| |||||| || || || |||||||| | |||| | ||| || |||
Sbjct 4214715 AAAATACTGGAAAGGAGGAACATCGGGCGCGCGATCTGTTTTTTGCATTGTGGATTCCTG 4214774
Query 363962 ACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAAT 364021
| | ||||||||| || || || || | | |||||||||| | || ||||| |||
Sbjct 4214775 ATCTTTTTATGAAACGTGTTGAAGCCAATGAAGATTGGTCACTAATGTGTCCACATAAAT 4214834
Query 364022 GTCCAGGTCTTTCCGATGTATGGGGTGACGACTATG--TTGCTCTATACGAAAAGTATGA 364079
|||| || ||| | ||||| |||||||| || | || || |||| ||| |||||
Sbjct 4214835 GTCCTGGCCTTCCAGATGTTTGGGGTGAAGATTTTGAAAACCTTTATATCAAA--TATGA 4214892
Query 364080 ATCGGAGGGAAAGGC---TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCAT 364136
| || ||| || ||| || ||| || || || ||||||||||| ||
Sbjct 4214893 ACAAGAAGGACGAGCGAATCG--AG-TTATTAAGGCTCAATCTCTTTGGTTTGCCATTAT 4214949
Query 364137 GGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAA 364196
|| || || | ||||| || |||||||| ||||| | || |||||||| ||| | ||
Sbjct 4214950 CGAATCTCAAGTAGAGACGGGTACACCCTACATGTTATTTAAGGATTCGTGTAACAGAAA 4215009
Query 364197 GTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGA 364256
|||||| || | |||| || || | || || || || || || || ||||
Sbjct 4215010 AAGCAACCAACAAAATGTTGGAACTATAAAATGCAGTAATCTGTGCACAGAAATAGTTGA 4215069
Query 364257 ATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTT 364308
|| | || || || || | || || ||||| | ||||| || || |||
Sbjct 4215070 GTATTCAGCACCAGATGAAATAGCTGTGTGTAATTTGGCGTCAATTGCACTT 4215121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303219121197446
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |