Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2 118 9e-22 seq3 98.7 9e-16 >seq2 Length=4222574 Score = 118 bits (130), Expect = 9e-22 Identities = 493/763 (65%), Gaps = 34/763 (4%) Strand=Plus/Minus Query 132200 TGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAGTA 132259 || || ||||||| |||| |||| || || || |||| || | ||| | || |||| Sbjct 4215687 TGATGGTTTACTACTTGAAATTCGCCGGACAATACTCGTCTTGTGTAAATGTTTGAAGTA 4215628 Query 132260 AACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAG 132319 | ||||||||||| || ||||| |||| |||||| || || | ||| || |||||| Sbjct 4215627 TAAGGCTCGAACGACTCATTGTTGCCCATTATTTGTGCAGTAGATGCTGTAGGCATGGGA 4215568 Query 132320 GCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCAG 132379 |||| | ||| ||||| | | || ||| || || |||||| | |||||| Sbjct 4215567 GCAACGAGTAAAGAATTTCTGACACCATGTTGCGCTATCGATTTTTTAAGAACATCCCAG 4215508 Query 132380 TTCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTACTT 132439 | ||| ||||| | | | || ||||||||| |||| |||| ||| || | ||| Sbjct 4215507 TCCCAAAGATC---TGTTGGCGATTTATTCCACATATCATACTGCAAAATTCCTTTGCTT 4215451 Query 132440 GCAGGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCTCTGA 132499 | ||| ||| ||||| || |||| ||| | | || || | ||| | ||| Sbjct 4215450 ACTGGACTTCCAACATAAGTCTCATATGGTCCATCTCTTTGAGCTAATTCACAG--CTGG 4215393 Query 132500 CT--CAGGGCACCATAATAAATAGTCTCTGAGATTTTTCT-ATTCAATTCCCTTGCTTGT 132556 || ||| || ||||| || ||||| || || | | | || ||| || ||| | Sbjct 4215392 CTTCCAGAGCTCCATAGTATATAGTTTC-GAAAATCTGCTGATTTAAAAGAAATGCATCA 4215334 Query 132557 TGACTGTCGTAGG------GCAAATTTAAAATAGCGAACGCATCGGCAAGTCCCTGAATG 132610 ||||| ||||| | ||| |||| || ||||| || |||| || || | Sbjct 4215333 TGACTTTCGTAAGAATACCGCA---TTAATAT---TAACGCGTCCGCAAACCCTTGGACT 4215280 Query 132611 CCGATACCGATGGGTCTATGTTTAAAATTCGATACTTGTGCGCTAGTCAGCGGATAAAAG 132670 || || || || || | || ||||| ||| || || | || || || | Sbjct 4215279 CCAATTCCAATAGGACGGTGGCGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAA 4215220 Query 132671 TTTTTGTCTATTATTTTATTGAGATTGTTAGTGACAACTCTAGCCACTTTATATAGCGAT 132730 ||| | || |||||||| || | || || || |||| | ||| |||| | ||| | Sbjct 4215219 TTTATATCAATTATTTTGTTTAAGTTTTTCGTAACAATTTTAGTTACTTCTTTAAGCTTT 4215160 Query 132731 TCAAAGTCAAAGTTTTTAGTCCTTTTGTTGGCA-AAACA-ATTGACGGCAATCGAGGCCA 132788 | ||||||| | ||| | | | || || ||||| ||| | ||||| || |||| Sbjct 4215159 TTAAAGTCATACGATTT--TTCATGCGT---CACAAACATATTAAGTGCAATTGACGCCA 4215105 Query 132789 AATTGCATACGGCTGTCTCTTTATTATCGCT--ATACTGTACGATTTCTGCACACAAATT 132846 |||| || || ||| | || | | ||| ||||| || ||||||| |||| ||| Sbjct 4215104 AATTACACACAGCTATTTCAT--CTGGTGCTGAATACTCAACTATTTCTGTGCACAGATT 4215047 Query 132847 ACTGTTTCGAATAACTCCCAAGtttttttGATTG-TTTTTCTCGTTTACGTTATCTTTAT 132905 |||| | ||| ||| | |||| ||| ||| ||||||| | ||| ||| ||| Sbjct 4215046 ACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACG-AATCCTTAA 4214988 Query 132906 GCAACATGTACGGACCTCCGGTTTCGACCTGAATTTCGATAAT 132948 |||||||| || || || || || ||| ||||||||| Sbjct 4214987 ATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAAT 4214945 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23986 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGG 24045 ||||||||||| | || || ||||| | || || || | |||||| | || |||||| Sbjct 180064 ACAAAATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGC 180123 Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 || |||||||||||| | ||||| ||||| ||||||||||| || || || | Sbjct 180124 CCTCTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCACCAG 180183 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATT 24165 |||| ||| | ||||| | | ||||||||| || || |||| | | | ||| | Sbjct 180184 ATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGACT 180243 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 | |||||||| || || || || | || |||||| Sbjct 180244 ACAACATTCAGAAGGAGTCCACTTTGCACTTAGTG 180278 >seq3 Length=21835025 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||| || | || || | || || ||| | | Sbjct 1955260 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCATCC 1955319 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| ||| | || || |||||| ||||| |||||||| || || ||||| Sbjct 1955320 GATACCATTGAGAACGTGAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 1955379 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || |||||||||||| ||||||| | | | | |||||| || Sbjct 1955380 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCCGATTACAAT 1955439 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| || || ||||| ||||||| || Sbjct 1955440 ATTCAGAAGGAGTCTACTCTTCATTTGGT 1955468 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || ||||| || || ||||| | || ||| | || || ||| | Sbjct 1954854 CAAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTTGAGCC 1954913 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||| ||||| ||| | ||||| |||||| || || |||||||| || || || Sbjct 1954914 TTCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAAGGCATTCCCCCAGA 1954973 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||| ||| | ||||| | || |||||||||||| ||||||| Sbjct 1954974 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATG 1955014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429893803528215