Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq2 118 9e-22
seq3 98.7 9e-16
>seq2
Length=4222574
Score = 118 bits (130), Expect = 9e-22
Identities = 493/763 (65%), Gaps = 34/763 (4%)
Strand=Plus/Minus
Query 132200 TGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAGTA 132259
|| || ||||||| |||| |||| || || || |||| || | ||| | || ||||
Sbjct 4215687 TGATGGTTTACTACTTGAAATTCGCCGGACAATACTCGTCTTGTGTAAATGTTTGAAGTA 4215628
Query 132260 AACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTAG 132319
| ||||||||||| || ||||| |||| |||||| || || | ||| || ||||||
Sbjct 4215627 TAAGGCTCGAACGACTCATTGTTGCCCATTATTTGTGCAGTAGATGCTGTAGGCATGGGA 4215568
Query 132320 GCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCAG 132379
|||| | ||| ||||| | | || ||| || || |||||| | ||||||
Sbjct 4215567 GCAACGAGTAAAGAATTTCTGACACCATGTTGCGCTATCGATTTTTTAAGAACATCCCAG 4215508
Query 132380 TTCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTACTT 132439
| ||| ||||| | | | || ||||||||| |||| |||| ||| || | |||
Sbjct 4215507 TCCCAAAGATC---TGTTGGCGATTTATTCCACATATCATACTGCAAAATTCCTTTGCTT 4215451
Query 132440 GCAGGAGATCCGTTATAAGAATCGTATGCTCCGTGTAATTTGGCAAGTTCTATGCTCTGA 132499
| ||| ||| ||||| || |||| ||| | | || || | ||| | |||
Sbjct 4215450 ACTGGACTTCCAACATAAGTCTCATATGGTCCATCTCTTTGAGCTAATTCACAG--CTGG 4215393
Query 132500 CT--CAGGGCACCATAATAAATAGTCTCTGAGATTTTTCT-ATTCAATTCCCTTGCTTGT 132556
|| ||| || ||||| || ||||| || || | | | || ||| || ||| |
Sbjct 4215392 CTTCCAGAGCTCCATAGTATATAGTTTC-GAAAATCTGCTGATTTAAAAGAAATGCATCA 4215334
Query 132557 TGACTGTCGTAGG------GCAAATTTAAAATAGCGAACGCATCGGCAAGTCCCTGAATG 132610
||||| ||||| | ||| |||| || ||||| || |||| || || |
Sbjct 4215333 TGACTTTCGTAAGAATACCGCA---TTAATAT---TAACGCGTCCGCAAACCCTTGGACT 4215280
Query 132611 CCGATACCGATGGGTCTATGTTTAAAATTCGATACTTGTGCGCTAGTCAGCGGATAAAAG 132670
|| || || || || | || ||||| ||| || || | || || || |
Sbjct 4215279 CCAATTCCAATAGGACGGTGGCGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAA 4215220
Query 132671 TTTTTGTCTATTATTTTATTGAGATTGTTAGTGACAACTCTAGCCACTTTATATAGCGAT 132730
||| | || |||||||| || | || || || |||| | ||| |||| | ||| |
Sbjct 4215219 TTTATATCAATTATTTTGTTTAAGTTTTTCGTAACAATTTTAGTTACTTCTTTAAGCTTT 4215160
Query 132731 TCAAAGTCAAAGTTTTTAGTCCTTTTGTTGGCA-AAACA-ATTGACGGCAATCGAGGCCA 132788
| ||||||| | ||| | | | || || ||||| ||| | ||||| || ||||
Sbjct 4215159 TTAAAGTCATACGATTT--TTCATGCGT---CACAAACATATTAAGTGCAATTGACGCCA 4215105
Query 132789 AATTGCATACGGCTGTCTCTTTATTATCGCT--ATACTGTACGATTTCTGCACACAAATT 132846
|||| || || ||| | || | | ||| ||||| || ||||||| |||| |||
Sbjct 4215104 AATTACACACAGCTATTTCAT--CTGGTGCTGAATACTCAACTATTTCTGTGCACAGATT 4215047
Query 132847 ACTGTTTCGAATAACTCCCAAGtttttttGATTG-TTTTTCTCGTTTACGTTATCTTTAT 132905
|||| | ||| ||| | |||| ||| ||| ||||||| | ||| ||| |||
Sbjct 4215046 ACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACG-AATCCTTAA 4214988
Query 132906 GCAACATGTACGGACCTCCGGTTTCGACCTGAATTTCGATAAT 132948
|||||||| || || || || || ||| |||||||||
Sbjct 4214987 ATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAAT 4214945
Score = 104 bits (114), Expect = 2e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 23986 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGG 24045
||||||||||| | || || ||||| | || || || | |||||| | || ||||||
Sbjct 180064 ACAAAATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGC 180123
Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105
|| |||||||||||| | ||||| ||||| ||||||||||| || || || |
Sbjct 180124 CCTCTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCACCAG 180183
Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATT 24165
|||| ||| | ||||| | | ||||||||| || || |||| | | | ||| |
Sbjct 180184 ATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGACT 180243
Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200
| |||||||| || || || || | || ||||||
Sbjct 180244 ACAACATTCAGAAGGAGTCCACTTTGCACTTAGTG 180278
>seq3
Length=21835025
Score = 98.7 bits (108), Expect = 9e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | || || || || | ||||| || | || || | || || ||| | |
Sbjct 1955260 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCATCC 1955319
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| ||||| ||| | || || |||||| ||||| |||||||| || || |||||
Sbjct 1955320 GATACCATTGAGAACGTGAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 1955379
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||| | ||||| | || |||||||||||| ||||||| | | | | |||||| ||
Sbjct 1955380 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCCGATTACAAT 1955439
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
||||| || || ||||| ||||||| ||
Sbjct 1955440 ATTCAGAAGGAGTCTACTCTTCATTTGGT 1955468
Score = 96.9 bits (106), Expect = 3e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
||||||||| | || || ||||| || || ||||| | || ||| | || || ||| |
Sbjct 1954854 CAAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTTGAGCC 1954913
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
||| ||||| ||| | ||||| |||||| || || |||||||| || || ||
Sbjct 1954914 TTCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAAGGCATTCCCCCAGA 1954973
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147
||| ||| | ||||| | || |||||||||||| |||||||
Sbjct 1954974 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATG 1955014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429893803528215
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |