Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 156 4e-33 seq3 113 4e-20 seq6 109 5e-19 >seq2 Length=4222574 Score = 156 bits (172), Expect = 4e-33 Identities = 175/233 (75%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| |||||| |||| ||| |||||||| || | || |||||||| ||||||||||| Sbjct 180301 ATGATGCCACCACGCAGACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAG 180242 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 ||| | ||||| ||||| ||||||||||| || |||| | ||||||||| || Sbjct 180241 TCGGATAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCT 180182 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || ||||| ||||||||||| ||| || ||||| | ||| | || || | || | Sbjct 180181 GGTGGGATCCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGC 180122 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||||| ||| || ||||| |||||||| ||||| || ||||| Sbjct 180121 TCGACCTCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCAT 180069 Score = 84.2 bits (92), Expect = 2e-11 Identities = 128/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 145609 CACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCT 145668 |||| | |||| | || || |||||||||||||| || || | || || | || ||| Sbjct 4215133 CACAAACATATTAAGTGCAATTGACGCCAAATTACACACAGCTATTTCATCTG-GT-GCT 4215076 Query 145669 G--TATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGA 145726 | || | || || || | ||||| ||| || ||||| || ||||| | |||||| || Sbjct 4215075 GAATACTCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGG 4215016 Query 145727 TTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTG 145785 || ||||| ||||| |||| ||||| | | |||||| ||| || ||||| || || Sbjct 4215015 TTGCTTTTTCTGTTACACGAATCCTTAAATAACATGTAGGGTGTACCCGTCTCTACTTG 4214957 >seq3 Length=21835025 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | ||| | |||||||||||| || || ||||| || | Sbjct 1955084 CCACCACGCAGACGGAGGACCAGATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAC 1955025 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || || |||||||| ||| |||| | ||||||||| || || || Sbjct 1955024 AAAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1954965 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || || || ||||| | ||| | ||||||| | ||| | Sbjct 1954964 ATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACC 1954905 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | |||||| ||||| |||||||| Sbjct 1954904 TCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCAT 1954858 >seq6 Length=21059900 Score = 109 bits (120), Expect = 5e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| ||||| || |||| || |||||||| ||||||||||| ||| Sbjct 7471136 GCCTCCACGTAGACGGAGCACCAAGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCGGA 7471195 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| ||| |||| ||||||||||| || || || Sbjct 7471196 CAGAGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGG 7471255 Query 131127 GATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 7471256 AATACCCTCCTTGTC 7471270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471965286011520