Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq2 156 4e-33
seq3 113 4e-20
seq6 109 5e-19
>seq2
Length=4222574
Score = 156 bits (172), Expect = 4e-33
Identities = 175/233 (75%), Gaps = 1/233 (0%)
Strand=Plus/Minus
Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061
|||| |||||| |||| ||| |||||||| || | || |||||||| |||||||||||
Sbjct 180301 ATGATGCCACCACGCAGACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAG 180242
Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121
||| | ||||| ||||| ||||||||||| || |||| | ||||||||| ||
Sbjct 180241 TCGGATAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCT 180182
Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181
|| ||||| ||||||||||| ||| || ||||| | ||| | || || | || |
Sbjct 180181 GGTGGGATCCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGC 180122
Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| || | ||||| ||| || ||||| |||||||| ||||| || |||||
Sbjct 180121 TCGACCTCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCAT 180069
Score = 84.2 bits (92), Expect = 2e-11
Identities = 128/179 (72%), Gaps = 4/179 (2%)
Strand=Plus/Minus
Query 145609 CACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCT 145668
|||| | |||| | || || |||||||||||||| || || | || || | || |||
Sbjct 4215133 CACAAACATATTAAGTGCAATTGACGCCAAATTACACACAGCTATTTCATCTG-GT-GCT 4215076
Query 145669 G--TATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGA 145726
| || | || || || | ||||| ||| || ||||| || ||||| | |||||| ||
Sbjct 4215075 GAATACTCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGG 4215016
Query 145727 TTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTG 145785
|| ||||| ||||| |||| ||||| | | |||||| ||| || ||||| || ||
Sbjct 4215015 TTGCTTTTTCTGTTACACGAATCCTTAAATAACATGTAGGGTGTACCCGTCTCTACTTG 4214957
>seq3
Length=21835025
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| ||| || || | ||| | |||||||||||| || || ||||| || |
Sbjct 1955084 CCACCACGCAGACGGAGGACCAGATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAC 1955025
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||||| || || || |||||||| ||| |||| | ||||||||| || || ||
Sbjct 1955024 AAAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1954965
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| || || || || ||||| | ||| | ||||||| | ||| |
Sbjct 1954964 ATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACC 1954905
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || || || | |||||| ||||| ||||||||
Sbjct 1954904 TCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCAT 1954858
>seq6
Length=21059900
Score = 109 bits (120), Expect = 5e-19
Identities = 105/135 (78%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066
||| || || | ||| ||||| || |||| || |||||||| ||||||||||| |||
Sbjct 7471136 GCCTCCACGTAGACGGAGCACCAAGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCGGA 7471195
Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126
|| |||||| ||||| ||||||||||| ||| |||| ||||||||||| || || ||
Sbjct 7471196 CAGAGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGG 7471255
Query 131127 GATTCCTTCTTTGTC 131141
|| || || |||||
Sbjct 7471256 AATACCCTCCTTGTC 7471270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471965286011520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |