Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq6 141 6e-29
seq3 113 3e-20
seq2 93.3 3e-14
>seq6
Length=21059900
Score = 141 bits (156), Expect = 6e-29
Identities = 161/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 6158 CACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAAT 6217
|| ||||| |||| | || || ||||| | ||| |||| ||||| |||||||||||
Sbjct 7520268 CAAGATGGCGACCGTCAATGTGAATCGCAGTGTTACGGATATCTTCTATCGCTACAAAAT 7520209
Query 6218 GCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAA 6277
||| ||| || ||||| || || |||||||| ||||| |||||||| ||| | |||||
Sbjct 7520208 GCCACGCCTCCAGGCCAAAGTGGAAGGTAAGGGCAACGGCATTAAAACGGTCCTCGTCAA 7520149
Query 6278 CATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGG 6337
|||| | || || || | ||| |||| | || || ||||| ||||| || || || ||
Sbjct 7520148 CATGGCCGAGGTGGCAAGAGCGATCGGGAGACCAGCTACCTATCCGACCAAGTACTTTGG 7520089
Query 6338 GTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
|| || || ||||| || ||||| || ||||| ||
Sbjct 7520088 CTGTGAGCTGGGCGCCCAAACGCAATTCGATCATAA 7520053
Score = 131 bits (144), Expect = 1e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGC-CAAGCTGCAGGACTTACTTGA 6433
||||| || ||||| || || ||||||||| | | || |||||||||||| || || ||
Sbjct 7519952 AACGAACGTTTCATTGTGAATGGATCGCATGA-TGTGAACAAGCTGCAGGATTTGCTCGA 7519894
Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTAT 6493
|| ||||||||||| |||||||| |||| || ||||||||||||||||| | || |
Sbjct 7519893 TGGTTTTATTCGCAAATTTGTGCTCTGTCCCGAGTGCGATAACCCGGAGACAAATCTAAC 7519834
Query 6494 TGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAA 6553
||| || |||||| | |||||||| ||| || || || || || | |||||||
Sbjct 7519833 TGTCTCGGCCAAGAATCAGACCATCTCGCAGTCGTGTAAGGCCTGTGGCTTCCATGGCCT 7519774
Query 6554 GCTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602
||| | | ||||| | || || | ||| |||||||||| |||
Sbjct 7519773 ACTGAAGGTGAACCACAAGGTGAATACGTACATTGTGAAGAATCCGCCA 7519725
>seq3
Length=21835025
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | || ||| | |||||||||||||| |||||| |||||||||||||| |||
Sbjct 1955486 CCACCACGCAGACGTAGAACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGAC 1955427
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
|| || | || || | ||| || ||||| || || || || || ||||| | |||
Sbjct 1955426 AAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1955367
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||| |||||| ||| || |||||| |||| | ||||| || ||
Sbjct 1955366 ATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCCACC 1955307
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || || || || |||| ||| |||||||| || |||||
Sbjct 1955306 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1955260
>seq2
Length=4222574
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | || ||| | ||| || || | |||| |||||| ||||| ||||| || ||
Sbjct 180295 CCACCACGCAGACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGAT 180236
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | ||| | || || | || || |||||||| || || || || ||||| | |||
Sbjct 180235 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGG 180176
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||||||||| || || ||| ||||||| || || || || ||
Sbjct 180175 ATCCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 180116
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323
|| || ||||| || || || || | ||||| ||||| || ||||| || ||
Sbjct 180115 TCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCATTTTGTA 180063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334914326293043
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |