Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq6 141 6e-29 seq3 113 3e-20 seq2 93.3 3e-14 >seq6 Length=21059900 Score = 141 bits (156), Expect = 6e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 6158 CACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAAT 6217 || ||||| |||| | || || ||||| | ||| |||| ||||| ||||||||||| Sbjct 7520268 CAAGATGGCGACCGTCAATGTGAATCGCAGTGTTACGGATATCTTCTATCGCTACAAAAT 7520209 Query 6218 GCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAA 6277 ||| ||| || ||||| || || |||||||| ||||| |||||||| ||| | ||||| Sbjct 7520208 GCCACGCCTCCAGGCCAAAGTGGAAGGTAAGGGCAACGGCATTAAAACGGTCCTCGTCAA 7520149 Query 6278 CATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGG 6337 |||| | || || || | ||| |||| | || || ||||| ||||| || || || || Sbjct 7520148 CATGGCCGAGGTGGCAAGAGCGATCGGGAGACCAGCTACCTATCCGACCAAGTACTTTGG 7520089 Query 6338 GTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 || || || ||||| || ||||| || ||||| || Sbjct 7520088 CTGTGAGCTGGGCGCCCAAACGCAATTCGATCATAA 7520053 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGC-CAAGCTGCAGGACTTACTTGA 6433 ||||| || ||||| || || ||||||||| | | || |||||||||||| || || || Sbjct 7519952 AACGAACGTTTCATTGTGAATGGATCGCATGA-TGTGAACAAGCTGCAGGATTTGCTCGA 7519894 Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTAT 6493 || ||||||||||| |||||||| |||| || ||||||||||||||||| | || | Sbjct 7519893 TGGTTTTATTCGCAAATTTGTGCTCTGTCCCGAGTGCGATAACCCGGAGACAAATCTAAC 7519834 Query 6494 TGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAA 6553 ||| || |||||| | |||||||| ||| || || || || || | ||||||| Sbjct 7519833 TGTCTCGGCCAAGAATCAGACCATCTCGCAGTCGTGTAAGGCCTGTGGCTTCCATGGCCT 7519774 Query 6554 GCTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 ||| | | ||||| | || || | ||| |||||||||| ||| Sbjct 7519773 ACTGAAGGTGAACCACAAGGTGAATACGTACATTGTGAAGAATCCGCCA 7519725 >seq3 Length=21835025 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | |||||||||||||| |||||| |||||||||||||| ||| Sbjct 1955486 CCACCACGCAGACGTAGAACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGAC 1955427 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || | ||| || ||||| || || || || || ||||| | ||| Sbjct 1955426 AAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1955367 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| ||| || |||||| |||| | ||||| || || Sbjct 1955366 ATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCCACC 1955307 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||| ||| |||||||| || ||||| Sbjct 1955306 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1955260 >seq2 Length=4222574 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | ||| || || | |||| |||||| ||||| ||||| || || Sbjct 180295 CCACCACGCAGACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGAT 180236 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| | || || | || || |||||||| || || || || ||||| | ||| Sbjct 180235 AGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGG 180176 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||||||| || || ||| ||||||| || || || || || Sbjct 180175 ATCCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACC 180116 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 || || ||||| || || || || | ||||| ||||| || ||||| || || Sbjct 180115 TCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCATTTTGTA 180063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334914326293043