Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 554 6e-153 >seq2 Length=4222574 Score = 554 bits (614), Expect = 6e-153 Identities = 1274/1901 (67%), Gaps = 32/1901 (2%) Strand=Plus/Minus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 |||||||| || | | | || ||||| || || ||||| ||||| || || || ||| Sbjct 4216020 GTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGA 4215961 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || |||| |||||||| || |||| ||| |||| | || || |||| Sbjct 4215960 CCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGGTTCAGCTACG 4215901 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || ||||| | ||| ||||||||||| || |||||||| ||||| || |||||||||||| Sbjct 4215900 TGAATATTGAAAGACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTTATA 4215841 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAG 62088 | | || || ||| ||||| | |||||||| || || | | | |||| | | Sbjct 4215840 GTTGATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATTTCCTTCGGAATT 4215781 Query 62089 GTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62146 | || |||| || || || |||| || || || || ||| || ||||| |||| | Sbjct 4215780 GATTCAATATTTTGTATTGAACCACGATTTGATATTATTTGATTTTTCATCTCGTCATCC 4215721 Query 62147 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62206 || || | ||||||||| | | || | || | || |||||||||||||| || Sbjct 4215720 CACAAATCAAGTTCGGTTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCGCCG 4215661 Query 62207 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 62266 |||||||||| | |||||||| || ||||| || || | |||||||| || ||| Sbjct 4215660 GACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTGTTGCCC 4215601 Query 62267 AAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 62326 | ||||| ||||| ||||| || ||||| || || || | |||| |||||| | ||| Sbjct 4215600 ATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACACC- 4215542 Query 62327 TATGTTCTGATTTT-ATCTTTTA-GAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 62384 ||||| | | | || ||||| || ||||| | ||||||||| | || | | Sbjct 4215541 -ATGTTGCGCTATCGATTTTTTAAGAACATCCCAGTCCCAAAGATCTGTTGG--CGATTT 4215485 Query 62385 NNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGT 62441 | || | ||| || || || | | || ||| ||||| || || | Sbjct 4215484 ATTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACT-TCCAACATAAGTCTCAT 4215426 Query 62442 ATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTT 62501 ||||||| || | | ||||| |||||| || || || | || || || || || |||| Sbjct 4215425 ATGGTCCATCTCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTT 4215366 Query 62502 CGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAA 62561 |||| |||| || ||||| | || || | || || | | ||| | | | Sbjct 4215365 CGAAAATCTGCTGATTTAAAAGAAATGCATCATGACTTTCGTAAGAATACCGCATTAATA 4215306 Query 62562 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGA 62621 | |||||||| || || ||||| || ||||| || ||||| | || | ||| || Sbjct 4215305 TTAACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATT 4215246 Query 62622 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAA 62681 ||| ||||||||| | ||| || ||||| ||||| || ||||| || | ||| | || Sbjct 4215245 TTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTAA 4215186 Query 62682 TTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTATTACAAACA 62738 | ||| || || || || || ||| ||| | | ||| | ||||||| Sbjct 4215185 CAATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACA 4215126 Query 62739 TGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTA 62798 | || | ||||| || |||| |||||| || |||| |||| | | | ||| | | Sbjct 4215125 TATTAAGTGCAATTGACGCCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAA 4215066 Query 62799 TTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTT 62858 ||| || ||||| |||||||| || || || ||||| | ||||||||| || || ||| Sbjct 4215065 CTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTC 4215006 Query 62859 TGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAA 62918 ||||||||| ||||||| | | ||| | || ||||| || || | |||||||| |||| Sbjct 4215005 TGTTACACGAATCCTTAAATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAA 4214946 Query 62919 TCGCTTTCCAGACGACTCGAGCCTTTATTA-TAGATTTGTATCTCTT--TTCTCTTTCGT 62975 | || ||| | | ||||||| || | | |||| | ||| | |||| ||| | Sbjct 4214945 TGGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCG---CTCGTCCTTCTTGTTCAT 4214889 Query 62976 ATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCAT 63035 || |||| | ||| || || || |||||||||| || |||||||||| || Sbjct 4214888 ATTTGATATAAAGGTTTTCAAAATCTTCACCCCAAACATCTGGAAGGCCAGGACATTTAT 4214829 Query 63036 CCGGACACATCAACGACCACTCTCCGTCATC--CTTCA-CTCGTTTCATAAAGAGATCAG 63092 |||||||| | ||||| ||| |||| ||||| | ||||||||||| ||||||| Sbjct 4214828 GTGGACACATTAGTGACCAATCT---TCATTGGCTTCAACACGTTTCATAAAAAGATCAG 4214772 Query 63093 GAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 63152 ||||||| | || | ||| ||||| | | | ||||||||| ||||| ||||| |||| Sbjct 4214771 GAATCCACAATGCAAAAAACAGATCGCGCGCCCGATGTTCCTCCTTTCCAGTATTTTTTT 4214712 Query 63153 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63212 |||| || | || | | | ||| || ||||| || || ||||| || || | ||| Sbjct 4214711 TAAGGTCCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGCTC 4214652 Query 63213 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63272 |||| | ||| || |||||||| | || | || |||||| ||||||| |||| Sbjct 4214651 CAGGTCTTTTACCACCGCCCTGATCGACATAACGTGCCACATTATTAAAAACTCTTAACA 4214592 Query 63273 TTGG-AATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGA 63331 |||| | |||| ||||| || ||||| || || || | || | |||| | || ||| Sbjct 4214591 TTGGTACTAAT-CCATTTGAAGTACCGTTCGTTCCACAAATTGATGTTCCTTTAGCTCGA 4214533 Query 63332 ATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT 63391 ||| || || || || || |||||| || || || | ||||||| | | Sbjct 4214532 ATACAGTGAACATTCAGTCCAATGCCACCTGCCGACTTTGAAATCATTGCGCATTGCTCA 4214473 Query 63392 AACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGA 63450 | | | | | || || || || |||| || || |||||| ||||| || ||| Sbjct 4214472 ACTGATTTAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAG-AGAAAGCATGAAGA 4214414 Query 63451 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTT 63510 || ||| |||| | || | ||| ||| | || || || || |||||||| | Sbjct 4214413 CAATTGTGGACGGTTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACG 4214354 Query 63511 TTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTAC 63570 ||||| || | |||||| || || | || || || ||||| ||| || |||| Sbjct 4214353 CTCAGATAGCAAATTGTAGGTTTCCACTGCAGAATCAATATCTTCGCCATGTATACCTAT 4214294 Query 63571 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 63630 || |||||||||| || ||||| |||||||| | || || |||||||| | ||| Sbjct 4214293 AGCAACACGCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAA 4214234 Query 63631 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63690 ||| || || | || ||||| ||||| ||||| ||| ||| || || || || || Sbjct 4214233 GTAAGACCGCTCAAGTGTCTTAAATCCAAAGTAGTTATATCCAAAATCACGATCATATAT 4214174 Query 63691 AATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACAT 63731 |||| | ||||| | |||| || || ||||||| || Sbjct 4214173 AATAGCAGAGTTCAAGCGATCCGAATTATTTTTAACTATAT 4214133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633568217018800