Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq4 131 1e-25
seq3 127 2e-24
seq2 123 2e-23
>seq4
Length=22154029
Score = 131 bits (144), Expect = 1e-25
Identities = 207/293 (71%), Gaps = 8/293 (3%)
Strand=Plus/Minus
Query 50989 AACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTCT 51048
||||| ||||| ||||| ||||||||||| | || | || || || ||||||
Sbjct 611987 AACTTGCGCTTGCAGCCTTGATAGTTCATATAGCGAATCTTACCGAATATCGCGCGTTCC 611928
Query 51049 TTGAACGGCCT--GTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAG 51106
|| | |||| |||||| | || | || |||||||| ||||| || || || |
Sbjct 611927 TT--CCAGCCTTGGTCGTGAATGCCACCGATGGACCACATGCAACCAACGTAGCCATTCG 611870
Query 51107 GATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGT 51166
||||||| ||||||| ||||| | |||||| | | |||| ||| | | ||| |
Sbjct 611869 GATCGCGCCCATCCAGACTGTACTTATCGTTCAATAGTATGCTATACTCTAGCGCCTGCT 611810
Query 51167 CTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCA 51226
| | | |||||||| | ||| || |||||||| |||||||||| | |||||||||
Sbjct 611809 CCGGCGTTTCGGTCCATTCTAAAATCTTTTTGGCCCAATACATGCGCAAGAAACCGTGCA 611750
Query 51227 TCTTGCCCTC--GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277
| |||||||| || | ||||| || |||||||||||||| |||||||
Sbjct 611749 TTTTGCCCTCCTTCACC--AGCTGTAGCTGGGCCGAGTTCCACAAGTCGTCGT 611699
>seq3
Length=21835025
Score = 127 bits (140), Expect = 2e-24
Identities = 158/214 (74%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| |||| || || ||||||| | || |||||| | ||
Sbjct 1955260 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCATCC 1955319
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || ||| ||||| | || | ||| ||||| ||||| ||||| || || ||
Sbjct 1955320 GATACCATTGAGAACGTGAAGGCTAAGATTCAG-GACAAGGAAGGCATTCCCCCAGATCA 1955378
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || || |||||||| ||| | ||||||| |||||| || |||||||||
Sbjct 1955379 GCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCCGATTACAA 1955438
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211
|||||| || || || || || ||||| || |||
Sbjct 1955439 TATTCAGAAGGAGTCTACTCTTCATTTGGTTCTA 1955472
>seq2
Length=4222574
Score = 123 bits (136), Expect = 2e-23
Identities = 155/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || || || ||| | ||||| || |||| || | || || ||| | ||
Sbjct 180068 AATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGCCCTC 180127
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||| |||||| | ||| || ||| |||||||||||||| ||||| || ||
Sbjct 180128 TGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCACCAGATCA 180187
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || ||||||||||| || | || |||| |||||| | ||| |||||
Sbjct 180188 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGACTACAA 180247
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || || ||||| | || ||||||||
Sbjct 180248 CATTCAGAAGGAGTCCACTTTGCACTTAGTGCT 180280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433285470617195
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |