Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4 131 1e-25 seq3 127 2e-24 seq2 123 2e-23 >seq4 Length=22154029 Score = 131 bits (144), Expect = 1e-25 Identities = 207/293 (71%), Gaps = 8/293 (3%) Strand=Plus/Minus Query 50989 AACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTCT 51048 ||||| ||||| ||||| ||||||||||| | || | || || || |||||| Sbjct 611987 AACTTGCGCTTGCAGCCTTGATAGTTCATATAGCGAATCTTACCGAATATCGCGCGTTCC 611928 Query 51049 TTGAACGGCCT--GTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAG 51106 || | |||| |||||| | || | || |||||||| ||||| || || || | Sbjct 611927 TT--CCAGCCTTGGTCGTGAATGCCACCGATGGACCACATGCAACCAACGTAGCCATTCG 611870 Query 51107 GATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGT 51166 ||||||| ||||||| ||||| | |||||| | | |||| ||| | | ||| | Sbjct 611869 GATCGCGCCCATCCAGACTGTACTTATCGTTCAATAGTATGCTATACTCTAGCGCCTGCT 611810 Query 51167 CTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCA 51226 | | | |||||||| | ||| || |||||||| |||||||||| | ||||||||| Sbjct 611809 CCGGCGTTTCGGTCCATTCTAAAATCTTTTTGGCCCAATACATGCGCAAGAAACCGTGCA 611750 Query 51227 TCTTGCCCTC--GCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277 | |||||||| || | ||||| || |||||||||||||| ||||||| Sbjct 611749 TTTTGCCCTCCTTCACC--AGCTGTAGCTGGGCCGAGTTCCACAAGTCGTCGT 611699 >seq3 Length=21835025 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||| || || ||||||| | || |||||| | || Sbjct 1955260 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCATCC 1955319 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| ||||| | || | ||| ||||| ||||| ||||| || || || Sbjct 1955320 GATACCATTGAGAACGTGAAGGCTAAGATTCAG-GACAAGGAAGGCATTCCCCCAGATCA 1955378 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || || |||||||| ||| | ||||||| |||||| || ||||||||| Sbjct 1955379 GCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCCGATTACAA 1955438 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||||| || || || || || ||||| || ||| Sbjct 1955439 TATTCAGAAGGAGTCTACTCTTCATTTGGTTCTA 1955472 >seq2 Length=4222574 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || || ||| | ||||| || |||| || | || || ||| | || Sbjct 180068 AATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGCCCTC 180127 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||| |||||| | ||| || ||| |||||||||||||| ||||| || || Sbjct 180128 TGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCACCAGATCA 180187 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| || | || |||| |||||| | ||| ||||| Sbjct 180188 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGACTACAA 180247 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || ||||| | || |||||||| Sbjct 180248 CATTCAGAAGGAGTCCACTTTGCACTTAGTGCT 180280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433285470617195