Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq4 273 2e-68
seq1 116 4e-21
>seq4
Length=22154029
Score = 273 bits (302), Expect = 2e-68
Identities = 607/897 (68%), Gaps = 29/897 (3%)
Strand=Plus/Plus
Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801
||||||||| ||||| |||||||| |||||||| || ||||| | |||| || ||
Sbjct 3240266 TTAGAAATCCGCATCAAGTGTAAACACATTGTCTAGCCGATTCGA---CGTAACGCC-CA 3240321
Query 92802 TTT-TTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCG 92860
| ||| ||||| |||||||| || || || || || || || || |||| || |||
Sbjct 3240322 TACGTTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCATCCAGCGAGATCA 3240381
Query 92861 AATTCACTA--GTGATTGGATTCTTGGCGTTATAATACTTTTC----ACCGA--TCAACT 92912
| || | |||| ||||||||| | || || | ||| | ||||| || ||
Sbjct 3240382 TCTCCATGAAGGTGAATGGATTCTTCGTATTGTAG-ATTTTGCCAACACCGAGTTCCACC 3240440
Query 92913 CGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTC 92972
| | | | ||| || |||||||| || || || |||||||| |||||||||| |
Sbjct 3240441 AGCAGA-----CGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAATTCATGC 3240495
Query 92973 CTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTT 93032
| | | | || || ||||| || || | || |||| ||| || ||| || ||
Sbjct 3240496 CAATCAAATTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCCG 3240555
Query 93033 TCAAGATTTCTAT--TACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAA 93090
| || || || ||| || | ||| | ||| || | || | |||| |
Sbjct 3240556 AGATAATCTCGATGATACGCTCCCGGCTGG--GCCGTTGCACCAAATGCCGGAACATCAT 3240613
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150
| |||||||| ||| || || ||||| ||||| |||||||||||| ||| || |
Sbjct 3240614 GACAGCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGTCAG 3240673
Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210
|||||| | ||| || || ||||| |||||||| || || ||||| || || || ||
Sbjct 3240674 ACCTGGCATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAAGAA 3240733
Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270
|| || |||||||| ||||| || | ||| | ||| |||| || || | || | |
Sbjct 3240734 GATTCCCTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCCTTC--GAT 3240791
Query 93271 GA--TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328
|| |||| | |||||||| || ||| ||| | | || | |||||| || ||
Sbjct 3240792 GAAATCCAAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCA 3240851
Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388
|| || || ||||| | | | | ||| | || ||||||||||| | || |||
Sbjct 3240852 TTGAACAGATAATCCCTTTGCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTAC 3240911
Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448
|| || || || ||||||||||| |||||||| || || |||||||| | |||||| ||
Sbjct 3240912 ATCTCCGAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCTTCGGTT 3240971
Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508
|| ||||| || || || | ||| || ||||| ||||| || || |||||||| ||
Sbjct 3240972 ATTTGCACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCGGAGGCG 3241031
Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-TTTAAGCTTATCCCA 93567
||||| || || | | |||| ||||| || ||| | ||| |||| | | ||||
Sbjct 3241032 GCAAAGAAGGCGAGCACATGCGAGATAAAGTGACGCTCGTTATCAGTTAAACGT-GCCCA 3241090
Query 93568 ATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624
|| | | ||| || || ||||| || || || |||||||| || || || || ||
Sbjct 3241091 GTCCGCCAAATCCTTGGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGCCTCGGC 3241147
>seq1
Length=24697304
Score = 116 bits (128), Expect = 4e-21
Identities = 78/86 (91%), Gaps = 2/86 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|||||||||||||||| |||||||||||||||||||||| |||||||| | | ||||
Sbjct 21852558 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 21852499
Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348
||||||||||||||||||||||||||
Sbjct 21852498 GTGGGTTCGAACCCCACACCTGACAA 21852473
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556804744999720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |