Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4 273 2e-68 seq1 116 4e-21 >seq4 Length=22154029 Score = 273 bits (302), Expect = 2e-68 Identities = 607/897 (68%), Gaps = 29/897 (3%) Strand=Plus/Plus Query 92742 TTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACA 92801 ||||||||| ||||| |||||||| |||||||| || ||||| | |||| || || Sbjct 3240266 TTAGAAATCCGCATCAAGTGTAAACACATTGTCTAGCCGATTCGA---CGTAACGCC-CA 3240321 Query 92802 TTT-TTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCG 92860 | ||| ||||| |||||||| || || || || || || || || |||| || ||| Sbjct 3240322 TACGTTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCATCCAGCGAGATCA 3240381 Query 92861 AATTCACTA--GTGATTGGATTCTTGGCGTTATAATACTTTTC----ACCGA--TCAACT 92912 | || | |||| ||||||||| | || || | ||| | ||||| || || Sbjct 3240382 TCTCCATGAAGGTGAATGGATTCTTCGTATTGTAG-ATTTTGCCAACACCGAGTTCCACC 3240440 Query 92913 CGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTC 92972 | | | | ||| || |||||||| || || || |||||||| |||||||||| | Sbjct 3240441 AGCAGA-----CGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAATTCATGC 3240495 Query 92973 CTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTT 93032 | | | | || || ||||| || || | || |||| ||| || ||| || || Sbjct 3240496 CAATCAAATTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCCG 3240555 Query 93033 TCAAGATTTCTAT--TACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAA 93090 | || || || ||| || | ||| | ||| || | || | |||| | Sbjct 3240556 AGATAATCTCGATGATACGCTCCCGGCTGG--GCCGTTGCACCAAATGCCGGAACATCAT 3240613 Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 | |||||||| ||| || || ||||| ||||| |||||||||||| ||| || | Sbjct 3240614 GACAGCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGTCAG 3240673 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 |||||| | ||| || || ||||| |||||||| || || ||||| || || || || Sbjct 3240674 ACCTGGCATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAAGAA 3240733 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || || |||||||| ||||| || | ||| | ||| |||| || || | || | | Sbjct 3240734 GATTCCCTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCCTTC--GAT 3240791 Query 93271 GA--TCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328 || |||| | |||||||| || ||| ||| | | || | |||||| || || Sbjct 3240792 GAAATCCAAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCA 3240851 Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388 || || || ||||| | | | | ||| | || ||||||||||| | || ||| Sbjct 3240852 TTGAACAGATAATCCCTTTGCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTAC 3240911 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448 || || || || ||||||||||| |||||||| || || |||||||| | |||||| || Sbjct 3240912 ATCTCCGAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCTTCGGTT 3240971 Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 || ||||| || || || | ||| || ||||| ||||| || || |||||||| || Sbjct 3240972 ATTTGCACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCGGAGGCG 3241031 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATC-TTTAAGCTTATCCCA 93567 ||||| || || | | |||| ||||| || ||| | ||| |||| | | |||| Sbjct 3241032 GCAAAGAAGGCGAGCACATGCGAGATAAAGTGACGCTCGTTATCAGTTAAACGT-GCCCA 3241090 Query 93568 ATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || | | ||| || || ||||| || || || |||||||| || || || || || Sbjct 3241091 GTCCGCCAAATCCTTGGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGCCTCGGC 3241147 >seq1 Length=24697304 Score = 116 bits (128), Expect = 4e-21 Identities = 78/86 (91%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 21852558 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 21852499 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||| Sbjct 21852498 GTGGGTTCGAACCCCACACCTGACAA 21852473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556804744999720