Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 154 1e-32 seq3 116 3e-21 seq6 96.9 3e-15 >seq2 Length=4222574 Score = 154 bits (170), Expect = 1e-32 Identities = 695/1090 (64%), Gaps = 15/1090 (1%) Strand=Plus/Minus Query 128785 ACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCTGTTTTC 128844 || || |||| ||||| | || || || || ||||| | ||| |||||||| || || Sbjct 4216023 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 4215964 Query 128845 AAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGTTGACTC 128904 | ||| |||||| | | | || || | || || | | || | |||| | Sbjct 4215963 AGACCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGGTTCAGCT 4215904 Query 128905 aaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATACCA 128964 | |||||| || || ||||||||||||||||||| || | || || ||||| Sbjct 4215903 ACGTGAATATTGAAAGACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTT 4215844 Query 128965 ATCAAATT--TTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTG 129022 || | || ||| | | || |||||||| ||||| || | || | | | || | Sbjct 4215843 AT--AGTTGATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATTTCCTTCG 4215786 Query 129023 GTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTT 129082 | ||| |||||| || || | || |||| || |||| ||| ||||| | Sbjct 4215785 GAATTGATTCAATATTTTGTATTGAACCACGATTTGATATTATTTGATTTTTCATCTCGT 4215726 Query 129083 CGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGAAAGT 129142 | | |||||| |||| | | ||||| | |||| | ||||| ||||||||| | Sbjct 4215725 CATCCCACAAATCAAGTTCGGTTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATT 4215666 Query 129143 CACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGT 129202 | || | ||| || || | ||||||||| || | ||||| ||||| ||||||| Sbjct 4215665 CGCCGGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTGT 4215606 Query 129203 TGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGTTTCGCA 129262 |||| | |||||| || || | || || |||||| ||| ||| | || |||| | Sbjct 4215605 TGCCCATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGA 4215546 Query 129263 AACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATGTGGGTGTGT 129322 ||| || || || |||||| | ||||||||| | ||| || | | Sbjct 4215545 CACCATGTTGCGCTATCGATTTTTTAAGAACATCCCAGTCCCAAAGATCTGTTGGCGATT 4215486 Query 129323 GATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAGGAATCGT 129382 |||||||| || || ||||| || || || | ||||| || || | || | Sbjct 4215485 TATTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTTCCAACATAAGTCTCAT 4215426 Query 129383 GCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAATTGTTT 129442 || | || || ||||| || || ||||||| || ||| | || || |||| Sbjct 4215425 ATGGTCCATCTCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTT 4215366 Query 129443 CGGCAATTTTGGTG-TTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATAC-GCAACAT 129500 || ||| | | || || || | || | | |||||||| | |||| ||| | Sbjct 4215365 CGAAAATCT-GCTGATTTAAAAGAAATGCATCATGACTTTCGTAAGA-ATACCGCATTAA 4215308 Query 129501 GGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGA 129560 || | ||| || || ||||| | || | || || || || || | ||| || Sbjct 4215307 TATTAACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGA 4215248 Query 129561 TTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCTTGAC 129620 ||||| || ||| || ||||| || || || || ||||||||||| || || Sbjct 4215247 TTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGT 4215188 Query 129621 CACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGATGTCGAC 129680 |||||||| ||||| | ||| | | ||| ||| | ||| | ||| ||| || Sbjct 4215187 AACAATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATACGATTTTTCAT--GCGTC-AC 4215131 Query 129681 AAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTG-- 129738 ||| ||| | ||| || |||||||| || || || |||| | || ||| Sbjct 4215130 AAACATATTAAGTGCAATTGACGCCAAATTACACACAGCTATTTC--ATCTGGTGCTGAA 4215073 Query 129739 TACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTA 129798 ||||| || ||||| | ||||| |||||| ||| || || || | || | ||| || Sbjct 4215072 TACTCAACTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTG 4215013 Query 129799 CTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTT 129858 ||||| |||| || | ||| || | | |||||| || || ||||| || ||||| | | Sbjct 4215012 CTTTTTCTGTTACACGAATCCTTAAATAACATGTAGGGTGTACCCGTCTCTACTTGAGAT 4214953 Query 129859 TCGACAATGG 129868 |||| ||||| Sbjct 4214952 TCGATAATGG 4214943 Score = 120 bits (132), Expect = 3e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| || || |||||| | ||||| || || | || | || || || || Sbjct 180066 AAAATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGCCC 180125 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || || ||||| || || || ||||| ||| Sbjct 180126 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCACCAGAT 180185 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || ||||||||||| ||| | |||||| ||||| | ||||| ||| Sbjct 180186 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGACTAC 180245 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || || ||||| | || ||||| | || |||| || || Sbjct 180246 AACATTCAGAAGGAGTCCACTTTGCACTTAGTGCTCCGTCTGCGTGGTGG 180295 >seq3 Length=21835025 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || ||||||| || ||||| | || Sbjct 1955260 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCATCC 1955319 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || ||||| |||||||| || ||||| || ||||| Sbjct 1955320 GATACCATTGAGAACGTGAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 1955379 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| || | || ||| |||||| | ||||||||||| Sbjct 1955380 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACCTTGTCCGATTACAAT 1955439 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | ||||| ||| | || |||| || || Sbjct 1955440 ATTCAGAAGGAGTCTACTCTTCATTTGGTTCTACGTCTGCGTGGTGG 1955486 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || ||||||||||| || || || || |||| || || || || | Sbjct 1954855 AAAATGCAGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCCTGGAGGTTGAGCCT 1954914 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||||||| | || | |||| || |||||||| ||||| || ||||| || ||| Sbjct 1954915 TCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAAGGCATTCCCCCAGAT 1954974 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| || | || ||| ||||| | || || ||| Sbjct 1954975 CAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGTCGCACTTTGTCTGACTAC 1955034 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || ||| | ||| | || | || |||| || ||| Sbjct 1955035 AATATCCAGAAGGAGTCGACCCTCCATCTGGTCCTCCGTCTGCGTGGTGGT 1955085 >seq6 Length=21059900 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || |||||||||||||||||||| || ||||| || ||| | || || || ||||| Sbjct 7471279 AAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGCAAG 7471220 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||||| | ||||| ||||||||||| || || || || |||| Sbjct 7471219 CAGCTGGAGGATGGGCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACTTTACAC 7471160 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || || | || | || ||||| Sbjct 7471159 TTGGTGCTCCGTCTACGTGGAGG 7471137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419686805401945