Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3 116 3e-21 seq2 100 2e-16 >seq3 Length=21835025 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | ||| ||||| | ||||| || || ||||| ||||||||| | Sbjct 1955486 CCACCACGCAGACGTAGAACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGAC 1955427 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || ||| |||||| ||||| || || ||| |||| |||||||| || || || ||| Sbjct 1955426 AAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1955367 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 |||||||| ||||| |||||| || | | |||| ||| |||| | || || Sbjct 1955366 ATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCCACC 1955307 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | || ||||| ||||| || || || || || ||||| Sbjct 1955306 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1955260 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | ||| | || || || || || || ||||| || Sbjct 1955087 ATACCACCACGCAGACGGAGGACCAGATGGAGGGTCGACTCCTTCTGGATATTGTAGTCA 1955028 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| ||| |||||| ||||| || || ||| |||| |||||||| || || || Sbjct 1955027 GACAAAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 1954968 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| || || |||||| || | | |||| ||| |||| | || Sbjct 1954967 GGAATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCA 1954908 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || |||| |||||| || || |||||||| Sbjct 1954907 ACCTCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCAT 1954858 >seq2 Length=4222574 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||||| || | || || || || ||||||||||| ||| Sbjct 180298 ATGCCACCACGCAGACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCG 180239 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| || || || || || || |||| |||||||| || || || Sbjct 180238 GATAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGT 180179 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||||||||| ||||| || | | || | |||||| | || ||| Sbjct 180178 GGGATCCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCG 180119 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || |||||||| |||||||| || || || ||||| Sbjct 180118 ACCTCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCAT 180069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420093165515436