Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq2 105 6e-18
>seq2
Length=4222574
Score = 105 bits (116), Expect = 6e-18
Identities = 300/457 (66%), Gaps = 8/457 (2%)
Strand=Plus/Plus
Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAG 20194
|| ||||||||||| || ||| |||| | | || || | | ||| | || |||
Sbjct 2651435 GGGAAGGGACGTGGTTCACGTTTCATCTGCTCCAGCAGGGGATTCACATGATTATTATAG 2651494
Query 20195 ATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCA 20254
| ||| ||||| |||| ||| || | || || ||||| | | ||| || ||||||||
Sbjct 2651495 ACGTGAGCATCACCCAGCGTATGGACGAAATCGCCGGGCTTCAAACCCGTCACATGAGCG 2651554
Query 20255 AGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCT 20314
| ||| || || || | || ||| ||| || || || || ||||||| |||||||||
Sbjct 2651555 ATCATGTAGGTCAACAAGGCATACGAGGCGATATTGAAGGGTACTCCCAGACCCATGTCG 2651614
Query 20315 CCCGACCTCTGATACAGCTGACAGGAAAGCTCAC----CGTCAGC--TACATAAAATTGA 20368
| | ||||||||| || ||||| | |||| || | || |||||| |||||
Sbjct 2651615 GCGCTGCGCTGATACAGTTGGCAGGACAATTCACCACGCGACTGCGATACATAGAATTGG 2651674
Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACAC 20428
| |||| || ||||| | ||||| | | |||| || ||||| || ||
Sbjct 2651675 ACCAGGCAGTGGCATGGCGGTAATGCCATTTGGGGTATGTCCAAAGGATTCCAGGCGGAC 2651734
Query 20429 ATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGG 20488
|| ||||| | | ||| |||||| || ||| ||| | | | ||| ||
Sbjct 2651735 ATTATGATGCGACGATCCGCCGGATTGTTGCGTATAGTATCGATGACCTGTTGCAACTGA 2651794
Query 20489 TCAAACCCCTGGCCTGTATAGTCAGC-ATCCGCGTCCACGTACGCCGCCCCAAAGTGCCT 20547
|||| ||||||||||| ||||| | | | | | | || || |||||||| |
Sbjct 2651795 TCAATACCCTGGCCTGTGTAGTCGTCGGTGCATTTAC-CATATTTAGCGCCAAAGTGACG 2651853
Query 20548 CCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCC 20584
|||||| || || || || || |||| ||| ||| ||
Sbjct 2651854 CCACTGAAAGCCATAGACTGGACCCAGATCACCCACC 2651890
Score = 95.1 bits (104), Expect = 1e-14
Identities = 219/329 (67%), Gaps = 6/329 (2%)
Strand=Plus/Plus
Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAG 20194
|| ||||||||||| || ||| |||| | | || || | | ||| | || |||
Sbjct 2650238 GGGAAGGGACGTGGTTCACGTTTCATCTGCTCCAGCAGGGGATTCACATGATTATTATAG 2650297
Query 20195 ATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCA 20254
| ||| ||||| |||| ||| || | || || ||||| | | ||| || ||||||||
Sbjct 2650298 ACGTGAGCATCACCCAGCGTATGGACGAAATCGCCGGGCTTCAAACCCGTCACATGAGCG 2650357
Query 20255 AGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCT 20314
| ||| || || || | || ||| ||| || || || || ||||||| |||||||||
Sbjct 2650358 ATCATGTAGGTCAACAAGGCATACGAGGCGATATTGAAGGGTACTCCCAGACCCATGTCG 2650417
Query 20315 CCCGACCTCTGATACAGCTGACAGGAAAGCTCAC----CGTCAGC--TACATAAAATTGA 20368
| | ||||||||| || ||||| | |||| || | || |||||| |||||
Sbjct 2650418 GCGCTGCGCTGATACAGTTGGCAGGACAATTCACCACGCGACTGCGATACATAGAATTGG 2650477
Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACAC 20428
| |||| || ||||| | ||||| | | |||| || ||||| || ||
Sbjct 2650478 ACCAGGCAGTGGCATGGCGGTAATGCCATTTGGGGTATGTCCAAAGGATTCCAGGCGGAC 2650537
Query 20429 ATAATGATTCTTCTATCGTGCGGATTATT 20457
|| ||||| | | ||| |||||| ||
Sbjct 2650538 ATTATGATGCGACGATCCGCCGGATTGTT 2650566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441328370310520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |