Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 >seq2 Length=4222574 Score = 105 bits (116), Expect = 6e-18 Identities = 300/457 (66%), Gaps = 8/457 (2%) Strand=Plus/Plus Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAG 20194 || ||||||||||| || ||| |||| | | || || | | ||| | || ||| Sbjct 2651435 GGGAAGGGACGTGGTTCACGTTTCATCTGCTCCAGCAGGGGATTCACATGATTATTATAG 2651494 Query 20195 ATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCA 20254 | ||| ||||| |||| ||| || | || || ||||| | | ||| || |||||||| Sbjct 2651495 ACGTGAGCATCACCCAGCGTATGGACGAAATCGCCGGGCTTCAAACCCGTCACATGAGCG 2651554 Query 20255 AGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCT 20314 | ||| || || || | || ||| ||| || || || || ||||||| ||||||||| Sbjct 2651555 ATCATGTAGGTCAACAAGGCATACGAGGCGATATTGAAGGGTACTCCCAGACCCATGTCG 2651614 Query 20315 CCCGACCTCTGATACAGCTGACAGGAAAGCTCAC----CGTCAGC--TACATAAAATTGA 20368 | | ||||||||| || ||||| | |||| || | || |||||| ||||| Sbjct 2651615 GCGCTGCGCTGATACAGTTGGCAGGACAATTCACCACGCGACTGCGATACATAGAATTGG 2651674 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACAC 20428 | |||| || ||||| | ||||| | | |||| || ||||| || || Sbjct 2651675 ACCAGGCAGTGGCATGGCGGTAATGCCATTTGGGGTATGTCCAAAGGATTCCAGGCGGAC 2651734 Query 20429 ATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGG 20488 || ||||| | | ||| |||||| || ||| ||| | | | ||| || Sbjct 2651735 ATTATGATGCGACGATCCGCCGGATTGTTGCGTATAGTATCGATGACCTGTTGCAACTGA 2651794 Query 20489 TCAAACCCCTGGCCTGTATAGTCAGC-ATCCGCGTCCACGTACGCCGCCCCAAAGTGCCT 20547 |||| ||||||||||| ||||| | | | | | | || || |||||||| | Sbjct 2651795 TCAATACCCTGGCCTGTGTAGTCGTCGGTGCATTTAC-CATATTTAGCGCCAAAGTGACG 2651853 Query 20548 CCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCC 20584 |||||| || || || || || |||| ||| ||| || Sbjct 2651854 CCACTGAAAGCCATAGACTGGACCCAGATCACCCACC 2651890 Score = 95.1 bits (104), Expect = 1e-14 Identities = 219/329 (67%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAG 20194 || ||||||||||| || ||| |||| | | || || | | ||| | || ||| Sbjct 2650238 GGGAAGGGACGTGGTTCACGTTTCATCTGCTCCAGCAGGGGATTCACATGATTATTATAG 2650297 Query 20195 ATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCA 20254 | ||| ||||| |||| ||| || | || || ||||| | | ||| || |||||||| Sbjct 2650298 ACGTGAGCATCACCCAGCGTATGGACGAAATCGCCGGGCTTCAAACCCGTCACATGAGCG 2650357 Query 20255 AGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCT 20314 | ||| || || || | || ||| ||| || || || || ||||||| ||||||||| Sbjct 2650358 ATCATGTAGGTCAACAAGGCATACGAGGCGATATTGAAGGGTACTCCCAGACCCATGTCG 2650417 Query 20315 CCCGACCTCTGATACAGCTGACAGGAAAGCTCAC----CGTCAGC--TACATAAAATTGA 20368 | | ||||||||| || ||||| | |||| || | || |||||| ||||| Sbjct 2650418 GCGCTGCGCTGATACAGTTGGCAGGACAATTCACCACGCGACTGCGATACATAGAATTGG 2650477 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACAC 20428 | |||| || ||||| | ||||| | | |||| || ||||| || || Sbjct 2650478 ACCAGGCAGTGGCATGGCGGTAATGCCATTTGGGGTATGTCCAAAGGATTCCAGGCGGAC 2650537 Query 20429 ATAATGATTCTTCTATCGTGCGGATTATT 20457 || ||||| | | ||| |||||| || Sbjct 2650538 ATTATGATGCGACGATCCGCCGGATTGTT 2650566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441328370310520