Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq4 102 6e-17 seq3 87.8 1e-12 >seq4 Length=22154029 Score = 102 bits (112), Expect = 6e-17 Identities = 187/265 (71%), Gaps = 8/265 (3%) Strand=Plus/Plus Query 37838 CTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGTATAT-GC 37896 |||||||||| |||| || | ||||| ||| ||||| || ||||| | || | | || Sbjct 611706 CTTGTGGAACTCGGCCCAGCTACAGCTGGTGAAGGAGGGCAAAATGCA-CGGTTTCTTGC 611764 Query 37897 GCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACC--GCGCTCAA 37954 ||||||||||| ||| || ||||| |||||| | || | || | || | ||||| | Sbjct 611765 GCATGTATTGGGCCAAAAAGATTTTAGAATGGACCGAA-ACGC-CGGAGCAGGCGCTAGA 611822 Query 37955 CTACGCCATT-TATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGTTACG 38013 || ||| ||| | || ||||||||||| |||| ||||| ||||| || || |||| Sbjct 611823 GTATAGCATACTAT-TGAACGATAAGTACAGTCTGGATGGGCGCGATCCGAATGGCTACG 611881 Query 38014 TCGGCTGTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAGATTCCCATTT 38073 | || || ||||||| || | || | ||||| || |||| || | || | Sbjct 611882 TTGGTTGCATGTGGTCCATCGGTGGCATTCACGACCAAGGCTGGAAGGAACGCGCGATAT 611941 Query 38074 ACGGCAAGATTCGGTACATGAACTA 38098 ||| |||||||| || |||||||| Sbjct 611942 TCGGTAAGATTCGCTATATGAACTA 611966 >seq3 Length=21835025 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || |||| |||||| || |||||||||||| |||||||| | | Sbjct 1955486 CCACCACGCAGACGTAGAACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGAC 1955427 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || | || |||| |||||||||||| || ||||| ||||||||||| Sbjct 1955426 AAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATC 1955374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397023429938506