Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3 129 1e-24 seq2 105 2e-17 >seq3 Length=21835025 Score = 129 bits (142), Expect = 1e-24 Identities = 184/256 (72%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || ||||| | || || || |||||||| ||||| | Sbjct 1955084 CCACCACGCAGACGGAGGACCAGATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAC 1955025 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| | ||| || || ||||||||||||||||| || ||||||| Sbjct 1955024 AAAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTG---ATCTGGG 1954968 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| ||||| || || || || || ||||| || || | |||| | || Sbjct 1954967 GGAATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCA 1954908 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT-GTTATT 288482 || || || ||||| ||||| || |||| ||| || ||||| ||||||||| | || ||| Sbjct 1954907 ACCTCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTTGGTAATT 1954848 Query 288483 CT---AATATTTTTAA 288495 || |||| ||||| Sbjct 1954847 CTGCAAATAAATTTAA 1954832 Score = 123 bits (136), Expect = 6e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | ||||| || || || || ||||| || |||| Sbjct 1955486 CCACCACGCAGACGTAGAACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGAC 1955427 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| | ||| || || ||||||||||||||||| || ||||||| Sbjct 1955426 AAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTG---ATCTGGG 1955370 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || ||||| || || || |||||||| || || | |||| | || Sbjct 1955369 GGAATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCC 1955310 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 1955309 ACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1955260 >seq2 Length=4222574 Score = 105 bits (116), Expect = 2e-17 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| || |||||||| || || | || || || || ||| Sbjct 180259 TCCTTCTGAATGTTGTAGTCGGATAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCAAAG 180200 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| ||| |||||| |||||||| |||||||| || || || || || Sbjct 180199 ATCAGACGCTGCTGATCTGGTGGGATCCCTTCTTTGTCCTGGATCTTGGCCTTGACATTC 180140 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || | || || || | || || ||||| ||||| ||||| || ||| Sbjct 180139 TCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTMACG 180080 Query 288463 AATATCTGCATTATGT 288478 || || |||||| ||| Sbjct 180079 AAGATTTGCATTTTGT 180064 Score = 86.0 bits (94), Expect = 1e-11 Identities = 219/328 (67%), Gaps = 8/328 (2%) Strand=Plus/Plus Query 72506 TGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAACATGTATGT 72565 ||| ||| |||||| | |||||| | |||||| | || | || | ||||||| Sbjct 1458357 TGCCAAGATGTACGGCTTTTGGATAGTGATCAATTACAGGGAAGCATACGATATGTATGC 1458416 Query 72566 ATGCAACTCGATTTGTTTCAATCACGAGAGTCC-CAACAGAGGCCATCAGTTCGTGACTC 72624 || || || ||||||||||||||||| | || | ||| | | || ||||| | Sbjct 1458417 CTGTAATGGCATACTATTCAATCACGAGAGTCCGCGAC-GTGGCGAAAACTTTGTGACAC 1458475 Query 72625 GTAAAATCACGAAGGTGGTCGCGAATATTTT---CAATGGTGTCGAAAAATGCATGTATC 72681 | ||||| || ||| || || ||||| |||| | || | | || | | Sbjct 1458476 GCAAAATTACCCGTTCGGTAGCAAAAATTTTGCTCAATCAAATGGAGTATTT--TG-AGC 1458532 Query 72682 TCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGT 72741 | || || | || | ||| | ||||||||| |||| | || || || || || |||| Sbjct 1458533 TAGGCAACTTGGACTCGAAACGCGATTGGGGACATGCCAGCGACTATGTGGAGGCCATGT 1458592 Query 72742 GGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAAACAACGA 72801 || |||||||||| | || || || | || |||||||||||||| || |||| | Sbjct 1458593 GGATGATGCTGCAGCGTGACACGCCTGCAGATTATGTGATTGCAACTGGTGAAACGCACA 1458652 Query 72802 GCGTTCGTGAGTTCGTGAAAATGGCATT 72829 |||| ||||| |||||| | |||||| Sbjct 1458653 GCGTGCGTGAATTCGTGGAGGCGGCATT 1458680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179532684364934