Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq3 129 1e-24
seq2 105 2e-17
>seq3
Length=21835025
Score = 129 bits (142), Expect = 1e-24
Identities = 184/256 (72%), Gaps = 10/256 (4%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || ||||| | || || || |||||||| ||||| |
Sbjct 1955084 CCACCACGCAGACGGAGGACCAGATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGAC 1955025
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||| || ||||| | ||| || || ||||||||||||||||| || |||||||
Sbjct 1955024 AAAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTG---ATCTGGG 1954968
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| ||||| ||||| || || || || || ||||| || || | |||| | ||
Sbjct 1954967 GGAATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCA 1954908
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT-GTTATT 288482
|| || || ||||| ||||| || |||| ||| || ||||| ||||||||| | || |||
Sbjct 1954907 ACCTCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTTGGTAATT 1954848
Query 288483 CT---AATATTTTTAA 288495
|| |||| |||||
Sbjct 1954847 CTGCAAATAAATTTAA 1954832
Score = 123 bits (136), Expect = 6e-23
Identities = 166/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || | ||||| || || || || ||||| || ||||
Sbjct 1955486 CCACCACGCAGACGTAGAACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGAC 1955427
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||| || ||||| | ||| || || ||||||||||||||||| || |||||||
Sbjct 1955426 AAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTG---ATCTGGG 1955370
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| ||||| || ||||| || || || |||||||| || || | |||| | ||
Sbjct 1955369 GGAATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCC 1955310
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| ||||| || ||||| ||||| ||||| || |||||
Sbjct 1955309 ACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1955260
>seq2
Length=4222574
Score = 105 bits (116), Expect = 2e-17
Identities = 141/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || || || || ||||||| || |||||||| || || | || || || || |||
Sbjct 180259 TCCTTCTGAATGTTGTAGTCGGATAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCAAAG 180200
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||||||||| ||| |||||| |||||||| |||||||| || || || || ||
Sbjct 180199 ATCAGACGCTGCTGATCTGGTGGGATCCCTTCTTTGTCCTGGATCTTGGCCTTGACATTC 180140
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || | || || || | || || ||||| ||||| ||||| || |||
Sbjct 180139 TCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTMACG 180080
Query 288463 AATATCTGCATTATGT 288478
|| || |||||| |||
Sbjct 180079 AAGATTTGCATTTTGT 180064
Score = 86.0 bits (94), Expect = 1e-11
Identities = 219/328 (67%), Gaps = 8/328 (2%)
Strand=Plus/Plus
Query 72506 TGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAACATGTATGT 72565
||| ||| |||||| | |||||| | |||||| | || | || | |||||||
Sbjct 1458357 TGCCAAGATGTACGGCTTTTGGATAGTGATCAATTACAGGGAAGCATACGATATGTATGC 1458416
Query 72566 ATGCAACTCGATTTGTTTCAATCACGAGAGTCC-CAACAGAGGCCATCAGTTCGTGACTC 72624
|| || || ||||||||||||||||| | || | ||| | | || ||||| |
Sbjct 1458417 CTGTAATGGCATACTATTCAATCACGAGAGTCCGCGAC-GTGGCGAAAACTTTGTGACAC 1458475
Query 72625 GTAAAATCACGAAGGTGGTCGCGAATATTTT---CAATGGTGTCGAAAAATGCATGTATC 72681
| ||||| || ||| || || ||||| |||| | || | | || | |
Sbjct 1458476 GCAAAATTACCCGTTCGGTAGCAAAAATTTTGCTCAATCAAATGGAGTATTT--TG-AGC 1458532
Query 72682 TCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGT 72741
| || || | || | ||| | ||||||||| |||| | || || || || || ||||
Sbjct 1458533 TAGGCAACTTGGACTCGAAACGCGATTGGGGACATGCCAGCGACTATGTGGAGGCCATGT 1458592
Query 72742 GGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAAACAACGA 72801
|| |||||||||| | || || || | || |||||||||||||| || |||| |
Sbjct 1458593 GGATGATGCTGCAGCGTGACACGCCTGCAGATTATGTGATTGCAACTGGTGAAACGCACA 1458652
Query 72802 GCGTTCGTGAGTTCGTGAAAATGGCATT 72829
|||| ||||| |||||| | ||||||
Sbjct 1458653 GCGTGCGTGAATTCGTGGAGGCGGCATT 1458680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179532684364934
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |