Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2 86.0 1e-11 >seq2 Length=4222574 Score = 86.0 bits (94), Expect = 1e-11 Identities = 219/328 (67%), Gaps = 8/328 (2%) Strand=Plus/Plus Query 68495 TGCAAAGTTGTACGCTTATTGGATCTGTAAAAATTACCGTGAGTCGTATAACATGTATGT 68554 ||| ||| |||||| | |||||| | |||||| | || | || | ||||||| Sbjct 1458357 TGCCAAGATGTACGGCTTTTGGATAGTGATCAATTACAGGGAAGCATACGATATGTATGC 1458416 Query 68555 ATGCAACTCGATTTGTTTCAATCACGAGAGTCC-CAACAGAGGCCATCAGTTCGTGACTC 68613 || || || ||||||||||||||||| | || | ||| | | || ||||| | Sbjct 1458417 CTGTAATGGCATACTATTCAATCACGAGAGTCCGCGAC-GTGGCGAAAACTTTGTGACAC 1458475 Query 68614 GTAAAATCACGAAGGTGGTCGCGAATATTTT---CAATGGTGTCGAAAAATGCATGTATC 68670 | ||||| || ||| || || ||||| |||| | || | | || | | Sbjct 1458476 GCAAAATTACCCGTTCGGTAGCAAAAATTTTGCTCAATCAAATGGAGTATTT--TG-AGC 1458532 Query 68671 TCGGTAATATAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGT 68730 | || || | || | ||| | ||||||||| |||| | || || || || || |||| Sbjct 1458533 TAGGCAACTTGGACTCGAAACGCGATTGGGGACATGCCAGCGACTATGTGGAGGCCATGT 1458592 Query 68731 GGTTGATGCTGCAACAAGATACTCCGGATGACTATGTGATTGCAACAGGGAAAACAACGA 68790 || |||||||||| | || || || | || |||||||||||||| || |||| | Sbjct 1458593 GGATGATGCTGCAGCGTGACACGCCTGCAGATTATGTGATTGCAACTGGTGAAACGCACA 1458652 Query 68791 GCGTTCGTGAGTTCGTGAAAATGGCATT 68818 |||| ||||| |||||| | |||||| Sbjct 1458653 GCGTGCGTGAATTCGTGGAGGCGGCATT 1458680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102766205875550