Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 5e-14 seq4 89.7 6e-13 >seq2 Length=4222574 Score = 93.3 bits (102), Expect = 5e-14 Identities = 573/906 (63%), Gaps = 35/906 (4%) Strand=Plus/Minus Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013 || || ||||| || |||||||||| |||| ||||| || || || ||||| |||||| Sbjct 4215630 GTATAAGGCTCGAACGACTCATTGTTGCCCATTATTTGTGCAGTAGATGCTGTAGGCATG 4215571 Query 114014 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCC 114073 || || | ||| | || | || ||| | || | || || || || | ||| Sbjct 4215570 GGAGCAACGAGTAAAGAATTTCTGACACCATGTTGCGCTATCGATTTTTTAAGAACATCC 4215511 Query 114074 CAGTCGTAGTTGAGCT-TTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGA 114132 ||||| | || || ||| | | |||||||||| |||| | || |||| | Sbjct 4215510 CAGTCCCAAA-GATCTGTTGGCGATTTATTCCACATATCATACTGCAAAATTCCTTTGCT 4215452 Query 114133 GGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGC 114192 |||| ||| || | ||||| ||||| || || | || ||||| |||| || Sbjct 4215451 TACTGGACTTCCAACATAAGTCTCATATGGTCCATCTCTTTGAGCTAATTCACAGCTGGC 4215392 Query 114193 CTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT------TGCCT--TG 114244 || || ||| | | || || || || ||||| | ||| | ||| | || Sbjct 4215391 TTCCAGAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAAAAGAAATGCATCATG 4215332 Query 114245 GCCT-CGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGAC 114303 | | ||| |||| | ||| | | || || || | ||||| | |||||||| Sbjct 4215331 ACTTTCGTAAGAAT--ACCGC-ATT------AATATTAACGCGTCCGCAAACCCTTGGAC 4215281 Query 114304 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC-CACGGGATAAA 114362 || | ||||| || || || | | ||| || ||| ||| ||| || || || Sbjct 4215280 TCCAATTCCAATAGGACGGTGGCGTAAATTTGATTTTTTAGCT-TCTGGCAAAGGGTAGT 4215222 Query 114363 AATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCT 114422 |||| |||| || | | |||| ||||| || |||| || || | ||| | ||||| Sbjct 4215221 AATTTATATCAATTATTTTGTTTAAGTTTTTCGTAACAATTTTAGTTACTTCTTTAAGCT 4215162 Query 114423 TTTCGTAATCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGGAAGGGCGATTGACG 114479 ||| | ||| | ||| | | |||| | ||| || || ||| || ||||||| Sbjct 4215161 TTTTAAAGTCATA----CGATTTT--TCATGCGTCACAAACATATTAAGTGCAATTGACG 4215108 Query 114480 CCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAAT 114539 ||| ||||||||||| | ||||| | | ||||| | ||||| || |||| || Sbjct 4215107 CCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAACTATTTCTGTGCACAGAT 4215048 Query 114540 TTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGT 114599 | | || || || || | || | ||| || ||| ||||||||| |||||| Sbjct 4215047 TACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACGAATCCTTAA 4214988 Query 114600 AAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC--AGACATC 114657 | | |||||| || || |||||||| ||| || | || ||| || || ||| || Sbjct 4214987 ATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAATGGCAAACCAAAGAGAT- 4214929 Query 114658 GGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTC 114717 | | || | | | || ||||| || || | || || || | || ||| ||| Sbjct 4214928 TGAGCCTTAATAACTCG-ATTCGCTCGTCCTTCTTGTTCATATTTGATATAAAGGTTTTC 4214870 Query 114718 AAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCA 114777 ||| ||||||||| | |||| || || || |||| ||| || | || ||||| Sbjct 4214869 AAAATCTTCACCCCAAACATCTGGAAGGCCAGGACATTTATGTGGACACATTAGTGACCA 4214810 Query 114778 TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAG 114837 | || | |||||||| ||||| || || || || ||||| | || | || || Sbjct 4214809 ATCTTCATTGGCTTCAACACGTTTCATAAAAAGATCAGGAATCCACAATGCAAAAAACAG 4214750 Query 114838 ATCCCG 114843 ||| || Sbjct 4214749 ATCGCG 4214744 Score = 87.8 bits (96), Expect = 2e-12 Identities = 185/270 (69%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 171880 TGTGAAGATGTACCT--CGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAAT 171937 |||||||||||| | || ||| || |||||| ||||| | | ||| || || || Sbjct 3935356 TGTGAAGATGTAACGAGCGCTTGC-ACA-ATCTTTACCACCGGTTAAACGTGTGCCGAAC 3935413 Query 171938 TGACCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAACTTG 171997 ||||| | ||||| || | ||| |||||||| || || | | | | ||||| || Sbjct 3935414 TGACCGCGAGGTTCTAGCAAATTTATATTGTTCGATCCGACAAAATTCTGTGCCAAATTT 3935473 Query 171998 ACAATCGT-ATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCGACATA 172056 || || || ||| || ||||| | || ||||||||||| || ||| | ||||| || | Sbjct 3935474 ACTATAGTCATCTGC-AGGGACATCTCGCCGTGATGGTATGCTGACATTTCCGCCACCGA 3935532 Query 172057 CGCCGCCAACTGTGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACAT 172116 | | | ||| ||||| || | ||| |||| ||| | |||||| | | |||| Sbjct 3935533 GCCGGATAGCTGAGCCACTTTTACCTCCCTCTTGTCGTTACGCTTGAAGCAAGTAAACAT 3935592 Query 172117 GACCTTTCTCTGTGAAGGCTTGAGGCCGTC 172146 ||||| | ||| |||||| ||||| || Sbjct 3935593 CACCTTACGCTGACCAGGCTTTAGGCCATC 3935622 >seq4 Length=22154029 Score = 89.7 bits (98), Expect = 6e-13 Identities = 327/502 (65%), Gaps = 10/502 (2%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 |||||||| || ||||| | ||||| ||||| ||| |||||||| ||||| |||||| Sbjct 3240636 CCCTCGTCGCGTGAGATCAACTCATTGGAGAACGTCAGACCTGGCATCAGACCACGCTTC 3240695 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 |||| ||| || |||| ||| || |||||||||||||||||| || ||| Sbjct 3240696 TTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAAGAAGATTCCCTCCACGGCAGCAAAC 3240755 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | | | ||| ||||| || ||| | || ||| | |||||| | Sbjct 3240756 GCGATAATTCTCTCGCCAAAGTTCGCCGCCTTCGATGAAATCCAAGAGAGCGCCCAATCA 3240815 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCTTTTCTGA 126303 |||||| || || | || | || | || || | || || | | |||| ||| Sbjct 3240816 GCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAGATAATCCCTTTGCTG- 3240874 Query 126304 TGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATTTCATT 126363 |||||| | || || |||| || || || | || ||| || ||| Sbjct 3240875 TGGATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCCGAGTGCAC--ATTCTCC 3240932 Query 126364 ATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCAAAA 126421 |||||| ||| | | |||||| | || |||||| |||| || ||||| | ||| || Sbjct 3240933 ATGGCAATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGCACCTCCT-GGCTGAA 3240991 Query 126422 TTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATATA 126480 | | | ||||||| |||||| |||||||| | ||||| || || || | || Sbjct 3240992 GCGCTCGACCAGATTCTCATTAACAATGCCATCGGAGGCGGCAAAGAAGGCGAGCACATG 3241051 Query 126481 CTTTATGAATTTCTGTTCATTCTC-GTTCAGGGTCTTCCAGTCGTCAAGATCCTTCGAGA 126539 | || || | | || || || ||| | || |||||| | | |||||| |||| Sbjct 3241052 CGAGATAAAGTGACGCTCGTTATCAGTTAAACGT-GCCCAGTCCGCCAAATCCTTGGAGA 3241110 Query 126540 GATCTACCTCCTCCGCAGTCCA 126561 |||| ||||||||| ||||||| Sbjct 3241111 GATCCACCTCCTCCACAGTCCA 3241132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597293468893240