Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq3 96.9 4e-15
seq2 93.3 5e-14
seq4 87.8 2e-12
seq3754 86.0 7e-12
seq6943 82.4 8e-11
seq716 82.4 8e-11
>seq3
Length=21835025
Score = 96.9 bits (106), Expect = 4e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
|||||||| | || |||||| |||||||||||||| | || || || | || ||
Sbjct 1955468 ACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGACCATCTTCC 1955409
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
|| ||||| || ||||| || || |||||||| || | || | || ||||||||| ||
Sbjct 1955408 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCC-TG 1955350
Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
| | || | || | || | | || ||| | ||||| || | |||||||| ||
Sbjct 1955349 AATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCCACCTCCAGAGTGATGGTCTT 1955290
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| || || ||||| || |||||||||||
Sbjct 1955289 GCCAGTCAGGGTCTTCACGAAGATTTGCAT 1955260
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 12445355 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 12445414
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 12445415 ATACTATCGAGGA 12445427
>seq2
Length=4222574
Score = 93.3 bits (102), Expect = 5e-14
Identities = 152/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | ||| || ||||| ||| |||||| ||||| ||||| || | ||||| || |
Sbjct 180284 ACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGATAGAGTGCGTCC 180225
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| || |||||||| || || || || || |||||||| || | ||| | | || ||
Sbjct 180224 ATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATCCCTTCTTT 180165
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
|||| ||| || |||| || | | ||||| | || || || | || ||
Sbjct 180164 GTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAAT 180105
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
||| ||||| || || || || || ||||||||||||||
Sbjct 180104 GGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCATTTT 180066
>seq4
Length=22154029
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 17509730 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 17509671
Query 57066 ATACTACCGAGGATTG 57081
|||||| |||||||||
Sbjct 17509670 ATACTATCGAGGATTG 17509655
Score = 86.0 bits (94), Expect = 7e-12
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079
||| |||||| ||||||||||||||||||||| ||||| |||||||||||| |||||||
Sbjct 17510079 AATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTATACTATCGAGGAT 17510020
Query 57080 TG 57081
||
Sbjct 17510019 TG 17510018
>seq3754
Length=1718
Score = 86.0 bits (94), Expect = 7e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 57003 TTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 57062
||| |||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||
Sbjct 941 TTTCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACC 1000
Query 57063 ACTATACTACCGAGGAT 57079
||||||||| |||||||
Sbjct 1001 ACTATACTATCGAGGAT 1017
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 752 TCTCCCCGACTGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 693
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 692 ATACTATCGAGGA 680
>seq6943
Length=1146
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 675 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 734
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 735 ATACTATCGAGGA 747
>seq716
Length=1004
Score = 82.4 bits (90), Expect = 8e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065
||||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 327 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 268
Query 57066 ATACTACCGAGGA 57078
|||||| ||||||
Sbjct 267 ATACTATCGAGGA 255
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543158118841520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |