Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 seq3 113 5e-20 >seq2 Length=4222574 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||||| || | || || || || ||||||||||| || | | ||||| | || Sbjct 180280 AGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGATAGAGTGCGTCCATCC 180221 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || || |||||||| || || || || |||||||| || Sbjct 180220 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATCCCTTCTTTGTCC 180161 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || ||| || || || || | || | |||| Sbjct 180160 TGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAATGGTC 180101 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||||| | |||||| ||||| ||||||||||| Sbjct 180100 TTGCCGGTGAGAGTTTTMACGAAGATTTGCATTTT 180066 Score = 118 bits (130), Expect = 1e-21 Identities = 324/494 (66%), Gaps = 2/494 (0%) Strand=Plus/Minus Query 154011 AAGTGCTGGTTAATTACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTG 154070 ||||| ||||| | ||||||||| ||||||| |||||| || | || | || Sbjct 4215690 AAGTGATGGTTTACTACTTGAAATTCGCCGGACAATACTCGTCTTGTGTAAATGTTTGAA 4215631 Query 154071 GTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATA 154130 || | ||||||||||| || |||||||| | |||||| || |||| |||||| ||||| Sbjct 4215630 GTATAAGGCTCGAACGACTCATTGTTGCCCATTATTTGTGCAGTAGATGCTGTAGGCATG 4215571 Query 154131 TACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAA-ATCTGC 154189 || || | ||||| |||| | ||| |||| || || || |||||| | | | Sbjct 4215570 GGAGCAACGAGTAAAGAATTTCTGACACCATGTTGCGCTAT-CGATTTTTTAAGAACATC 4215512 Query 154190 CCAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACT 154249 ||| | ||| | | || || |||||||| || || ||||||| || || Sbjct 4215511 CCAGTCCCAAAGATCTGTTGGCGATTTATTCCACATATCATACTGCAAAATTCCTTTGCT 4215452 Query 154250 CGCCGGACTGTCACTATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGC 154309 | ||||| || |||| | || || || | || || || || || ||||| Sbjct 4215451 TACTGGACTTCCAACATAAGTCTCATATGGTCCATCTCTTTGAGCTAATTCACAGCTGGC 4215392 Query 154310 TTCTAACGCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTC 154369 ||| | || ||||||||| |||||| ||| || | ||||| | || | | Sbjct 4215391 TTCCAGAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAAAAGAAATGCATCATG 4215332 Query 154370 ACTTTCGTACGGCAATCCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCC 154429 ||||||||| | | | || || || || || || | |||||| | || | ||| Sbjct 4215331 ACTTTCGTAAGAATACCGCATTAATATTAACGCGTCCGCAAACCCTTGGACTCCAATTCC 4215272 Query 154430 AACGGGTCTGTGTTTTAAATTCGATTCTTTGGCAGCCTCCAGAGGATAATAATTGATATC 154489 || || | ||| |||||| |||| ||| || | || ||| || ||||| ||||| Sbjct 4215271 AATAGGACGGTGGCGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTAGTAATTTATATC 4215212 Query 154490 GATAATTTTATTTA 154503 || ||||| |||| Sbjct 4215211 AATTATTTTGTTTA 4215198 >seq3 Length=21835025 Score = 113 bits (124), Expect = 5e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || || ||||| | ||||| || || || || ||||| || | Sbjct 1955085 ACCACCACGCAGACGGAGGACCAGATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGA 1955026 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| || ||||||||||| | || || |||||||| || || || Sbjct 1955025 CAAAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 1954966 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| || || ||| || ||| | ||||| | || || Sbjct 1954965 AATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAAC 1954906 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAAT 64452 || | || | |||||| || ||||||||||| ||||| || |||||||| |||| Sbjct 1954905 CTCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTTGGTAAT 1954849 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || | ||||| || || || || ||||| |||||||| | | |||||| | ||| Sbjct 1955471 AGAACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGACCATCT 1955412 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||||||||| | || || |||||||| || || ||||| ||||| || || Sbjct 1955411 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 1955352 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | ||||| | ||||| || | ||| | |||| Sbjct 1955351 TGAATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCCACCTCCAGAGTGATGGTC 1955292 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || ||||| |||||||| Sbjct 1955291 TTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1955260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499594504505320