Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq2 111 2e-19
seq4 89.7 5e-13
>seq2
Length=4222574
Score = 111 bits (122), Expect = 2e-19
Identities = 485/755 (64%), Gaps = 23/755 (3%)
Strand=Plus/Minus
Query 153021 aaGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTA 153080
|||| ||||| || |||||||| ||||| | ||| |||||||| || | || |
Sbjct 4215690 AAGTGATGGTTTACTACTTGAAATTCGCCGGACAATACTCGTCTTGTGTAAATGTTTGAA 4215631
Query 153081 GTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATG 153140
|| |||| || || || || || ||||| | |||||| || || | ||| || ||||||
Sbjct 4215630 GTATAAGGCTCGAACGACTCATTGTTGCCCATTATTTGTGCAGTAGATGCTGTAGGCATG 4215571
Query 153141 TACGCCACCAACAAAGAATTCCGCAAGCCGTG---CGCT--CGAATGTCGTCCTTCAACG 153195
|| || | |||||||| | | || || |||| ||| | | || |
Sbjct 4215570 GGAGCAACGAGTAAAGAATTTCTGACACCATGTTGCGCTATCGATTTT-----TTAAGAA 4215516
Query 153196 CCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTC 153255
| | ||| ||||| || | | || | |||||||| || ||||| || | ||||
Sbjct 4215515 CATCCCAGTCCCAAAGATCTGTTGGCGATTTATTCCACATATCATACTGCAAAATTCCTT 4215456
Query 153256 GACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGC 153315
|| | ||||| || || | || || || || | ||| || | ||| ||||
Sbjct 4215455 TGCTTACTGGACTTCCAACATAAGTCTCATATGGTCCATCTCTTTGAGCTAATTCACAGC 4215396
Query 153316 TAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTT 153375
| || || || || ||||||||||| |||||| || || | ||| | || || |
Sbjct 4215395 TGGCTTCCAGAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAAAAGAAATGCAT 4215336
Query 153376 CTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGA 153435
| | || ||||| | |||| | | || ||||| || | || |||| || |
Sbjct 4215335 CATGACTTTCGTAAGAATACCGCATTAATATTAACGCGTCCGCAAACCCTTGGACTCCAA 4215276
Query 153436 CGCCGATGGGTCGATG-CTTCTCGTTGCTGCGCCTCGCG-CTCGCTATGGGATAGTGATT 153493
|| || || || || | | ||| | | || || || | ||| |||| |||
Sbjct 4215275 TTCCAATAGGACGGTGGCGTAAATTTGATTTTT-TAGCTTCTGGCAAAGGG-TAGTAATT 4215218
Query 153494 GCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTC 153553
||| || |||||||| | ||| | || | |||||||| | ||||| || |
Sbjct 4215217 TATATCAATTATTTTGTTTAAGTTTTTCGTAACAATTTTAGTTACTTCTTTAAGCTTTTT 4215158
Query 153554 GAAATCATAGGTCATTTCGTCGACGCGT-ACGCATCGATTCACGGCAATAGACGCCAGAT 153612
|| ||||| | |||| | |||| || | ||| | ||||| ||||||| ||
Sbjct 4215157 AAAGTCATACGATTTTTCAT----GCGTCACAAACATATTAAGTGCAATTGACGCCAAAT 4215102
Query 153613 TACAGACGGCCGTCTCTTCGGCGTCGCTG--TACTGCACGATCTCGGCGCAGAGGTTGCT 153670
|||| || || | || || | || |||| |||| || || || | ||| || || ||
Sbjct 4215101 TACACACAGCTATTTCATCTG-GT-GCTGAATACTCAACTATTTCTGTGCACAGATTACT 4215044
Query 153671 GCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAG 153730
||||||||| || | |||||| || |||||||| | || |||| || || || |
Sbjct 4215043 GCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACGAATCCTTAAATAA 4214984
Query 153731 CATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGA 153765
|||||| ||| || ||||| ||||| | |||||
Sbjct 4214983 CATGTAGGGTGTACCCGTCTCTACTTGAGATTCGA 4214949
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || |||| ||| | ||||| || | | |||||||| |||||||||||||||
Sbjct 180296 GCCACCACGCAGACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGA 180237
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||| || ||||| || || || |||| | |||| |||||||| || || || ||
Sbjct 180236 TAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGG 180177
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||||||||| ||| || || | | || | |||||| | | ||| ||
Sbjct 180176 GATCCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGAC 180117
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || || || |||||||| || || || |||||
Sbjct 180116 CTCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCAT 180069
>seq4
Length=22154029
Score = 89.7 bits (98), Expect = 5e-13
Identities = 150/212 (71%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 52635 GAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-GCGCAGTCCATGTG 52693
|||||| | || | || ||||| ||| | || | |||||||| | ||| | ||||
Sbjct 3240532 GAGTTTCTCACAGATGCTCTGCCCGTCAATTTGATTGGCATGAATTGTGCATTG-ATGTC 3240474
Query 52694 CGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG-GCAGCCAAAGTACT 52752
| | || || || |||||||||||||||||| ||||| | ||||| | | |||| | ||
Sbjct 3240473 CCAATATATTGAATTTGTGGCGGATCGTCTGCTGGTGGAACTCGGTGTTGGCAAAAT-CT 3240415
Query 52753 TCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACT 52812
||| | ||||| || || ||| | | || ||||| || ||||| || ||||
Sbjct 3240414 ACAATACGAAGAATCCATTCACCTTCATGGAGATGATCTCGCTGGATGGCAAAACTAACT 3240355
Query 52813 TTTTCGAGAAGCGAGTCGGCGAGTATAAGCGT 52844
||||||||||| ||| || || ||| | |||
Sbjct 3240354 TTTTCGAGAAGAAAGTTGGAGAATATCAACGT 3240323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496212444986160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |