Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 111 2e-19 seq4 89.7 5e-13 >seq2 Length=4222574 Score = 111 bits (122), Expect = 2e-19 Identities = 485/755 (64%), Gaps = 23/755 (3%) Strand=Plus/Minus Query 153021 aaGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTA 153080 |||| ||||| || |||||||| ||||| | ||| |||||||| || | || | Sbjct 4215690 AAGTGATGGTTTACTACTTGAAATTCGCCGGACAATACTCGTCTTGTGTAAATGTTTGAA 4215631 Query 153081 GTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATG 153140 || |||| || || || || || ||||| | |||||| || || | ||| || |||||| Sbjct 4215630 GTATAAGGCTCGAACGACTCATTGTTGCCCATTATTTGTGCAGTAGATGCTGTAGGCATG 4215571 Query 153141 TACGCCACCAACAAAGAATTCCGCAAGCCGTG---CGCT--CGAATGTCGTCCTTCAACG 153195 || || | |||||||| | | || || |||| ||| | | || | Sbjct 4215570 GGAGCAACGAGTAAAGAATTTCTGACACCATGTTGCGCTATCGATTTT-----TTAAGAA 4215516 Query 153196 CCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTC 153255 | | ||| ||||| || | | || | |||||||| || ||||| || | |||| Sbjct 4215515 CATCCCAGTCCCAAAGATCTGTTGGCGATTTATTCCACATATCATACTGCAAAATTCCTT 4215456 Query 153256 GACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGC 153315 || | ||||| || || | || || || || | ||| || | ||| |||| Sbjct 4215455 TGCTTACTGGACTTCCAACATAAGTCTCATATGGTCCATCTCTTTGAGCTAATTCACAGC 4215396 Query 153316 TAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTT 153375 | || || || || ||||||||||| |||||| || || | ||| | || || | Sbjct 4215395 TGGCTTCCAGAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAAAAGAAATGCAT 4215336 Query 153376 CTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGA 153435 | | || ||||| | |||| | | || ||||| || | || |||| || | Sbjct 4215335 CATGACTTTCGTAAGAATACCGCATTAATATTAACGCGTCCGCAAACCCTTGGACTCCAA 4215276 Query 153436 CGCCGATGGGTCGATG-CTTCTCGTTGCTGCGCCTCGCG-CTCGCTATGGGATAGTGATT 153493 || || || || || | | ||| | | || || || | ||| |||| ||| Sbjct 4215275 TTCCAATAGGACGGTGGCGTAAATTTGATTTTT-TAGCTTCTGGCAAAGGG-TAGTAATT 4215218 Query 153494 GCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTC 153553 ||| || |||||||| | ||| | || | |||||||| | ||||| || | Sbjct 4215217 TATATCAATTATTTTGTTTAAGTTTTTCGTAACAATTTTAGTTACTTCTTTAAGCTTTTT 4215158 Query 153554 GAAATCATAGGTCATTTCGTCGACGCGT-ACGCATCGATTCACGGCAATAGACGCCAGAT 153612 || ||||| | |||| | |||| || | ||| | ||||| ||||||| || Sbjct 4215157 AAAGTCATACGATTTTTCAT----GCGTCACAAACATATTAAGTGCAATTGACGCCAAAT 4215102 Query 153613 TACAGACGGCCGTCTCTTCGGCGTCGCTG--TACTGCACGATCTCGGCGCAGAGGTTGCT 153670 |||| || || | || || | || |||| |||| || || || | ||| || || || Sbjct 4215101 TACACACAGCTATTTCATCTG-GT-GCTGAATACTCAACTATTTCTGTGCACAGATTACT 4215044 Query 153671 GCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAG 153730 ||||||||| || | |||||| || |||||||| | || |||| || || || | Sbjct 4215043 GCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACACGAATCCTTAAATAA 4214984 Query 153731 CATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGA 153765 |||||| ||| || ||||| ||||| | ||||| Sbjct 4214983 CATGTAGGGTGTACCCGTCTCTACTTGAGATTCGA 4214949 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||| | ||||| || | | |||||||| ||||||||||||||| Sbjct 180296 GCCACCACGCAGACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGA 180237 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || ||||| || || || |||| | |||| |||||||| || || || || Sbjct 180236 TAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGG 180177 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| || || | | || | |||||| | | ||| || Sbjct 180176 GATCCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGAC 180117 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || |||||||| || || || ||||| Sbjct 180116 CTCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCAT 180069 >seq4 Length=22154029 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 52635 GAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-GCGCAGTCCATGTG 52693 |||||| | || | || ||||| ||| | || | |||||||| | ||| | |||| Sbjct 3240532 GAGTTTCTCACAGATGCTCTGCCCGTCAATTTGATTGGCATGAATTGTGCATTG-ATGTC 3240474 Query 52694 CGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGG-GCAGCCAAAGTACT 52752 | | || || || |||||||||||||||||| ||||| | ||||| | | |||| | || Sbjct 3240473 CCAATATATTGAATTTGTGGCGGATCGTCTGCTGGTGGAACTCGGTGTTGGCAAAAT-CT 3240415 Query 52753 TCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACT 52812 ||| | ||||| || || ||| | | || ||||| || ||||| || |||| Sbjct 3240414 ACAATACGAAGAATCCATTCACCTTCATGGAGATGATCTCGCTGGATGGCAAAACTAACT 3240355 Query 52813 TTTTCGAGAAGCGAGTCGGCGAGTATAAGCGT 52844 ||||||||||| ||| || || ||| | ||| Sbjct 3240354 TTTTCGAGAAGAAAGTTGGAGAATATCAACGT 3240323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496212444986160