Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 187 2e-42 seq3 96.9 3e-15 >seq2 Length=4222574 Score = 187 bits (206), Expect = 2e-42 Identities = 499/754 (66%), Gaps = 19/754 (3%) Strand=Plus/Plus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 ||||||||| | ||||| || || || || || |||||| | | || || | || ||| Sbjct 4214945 ATTATCGAATCTCAAGTAGAGACGGGTACACCCTACATGTTATTTAAGGATTCGTGTAAC 4215004 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 || |||| ||| || || | ||||| |||||||| |||||||| ||| | ||||| Sbjct 4215005 AGAAAAAGCAACCAACAAAATGTTGGAACTATAAAATGCAGTAATCTGTGCACAGAAATA 4215064 Query 123708 ATCGAATA--CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGA 123765 | || || |||| | ||| || | || |||||||||||||| || ||| | | Sbjct 4215065 GTTGAGTATTCAGCAC--CAGATGAAATAGCTGTGTGTAATTTGGCGTCAATTGCACTTA 4215122 Query 123766 ATCG--TTGCGTCGAA---AACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAA 123820 || ||| | || | || || | | | || ||| ||| ||| |||| || Sbjct 4215123 ATATGTTTGTGACGCATGAAAAATCG--TATGACTTTAAAAAGCTTAAAGAAGTAACTAA 4215180 Query 123821 AACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGC 123880 || ||| || || || |||||||| || ||| | |||| || |||||| ||||| Sbjct 4215181 AATTGTTACGAAAAACTTAAACAAAATAATTGATATAAATTACTACCCTTTGCCAGAAGC 4215240 Query 123881 GCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGC 123940 || ||||| ||| | || | ||| | || | |||||||| || ||||| Sbjct 4215241 TAAAAAATCAAATTTACGCCACCGTCCTATTGGAATTGGAGTCCAAGGGTTTGCGGACGC 4215300 Query 123941 GTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTT---AATACGCA 123997 ||| || | |||| | |||||||| | || ||| || ||| ||| ||| Sbjct 4215301 GTTAATATTAATGCGGTATTCTTACGAAAGTCATGATGCA---TTTCTTTTAAATCAGCA 4215357 Query 123998 AATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCA 124057 || |||||| || || || || ||| |||| || ||||| ||| | || ||| | Sbjct 4215358 GATTTTCGAAACTATATACTATGGAGCTCTGGAAGCCAGCTGTGAATTAGCTCAAAGAGA 4215417 Query 124058 CGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACAT 124117 || | || || | ||| | || || || | ||| ||| ||||||||||| || || Sbjct 4215418 TGGACCATATGAGACTTATGTTGGAAGTCCAGTAAGCAAAGGAATTTTGCAGTATGATAT 4215477 Query 124118 GTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTT-TTAAAACAACGCATATCGA 124176 ||||||| | || ||| || | ||||||||| ||| |||||| | || ||| || Sbjct 4215478 GTGGAATAAATCGCCAACAGATCTTTGGGACTGGGATGTTCTTAAAAAATCG-ATAGCGC 4215536 Query 124177 CGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAA 124236 || ||| | | || || | | || || |||||| || ||| | ||||| |||| Sbjct 4215537 AACATGGTGTCAGAAATTCTTTACTCGTTGCTCCCATGCCTACAGCATCTACTGCACAAA 4215596 Query 124237 TTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGT 124296 | | || ||||| || || |||||||| | ||| || | ||| ||||||| | Sbjct 4215597 TAATGGGCAACAATGAGTCGTTCGAGCCTTATACTTCAAACATTTACACAAGACGAGTAT 4215656 Query 124297 TAGCCGGCGATTTTCAAGTGATAAATCATCATTT 124330 | ||||||| |||||||| |||| ||||| || Sbjct 4215657 TGTCCGGCGAATTTCAAGTAGTAAACCATCACTT 4215690 >seq3 Length=21835025 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || ||||| |||||||| || || | || | ||| ||| Sbjct 1955066 ACCAGATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAAGTGCGACCATCTTCC 1955007 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| || || ||| | |||| || ||||| || || ||||||||||| ||||||||| Sbjct 1955006 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTATCTTGA 1954947 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | || | ||| ||||||| ||| || || || || | || || Sbjct 1954946 ATCTTGGCCTTGA-CGTTCTCAATGGTATCGGAAGGCTCAACCTCCAGGGTGATGGTCTT 1954888 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | |||||| || || || ||||| Sbjct 1954887 TCCCGTCAAAGTTTTAACGAAGATCTGCAT 1954858 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || || ||||| || ||||| |||||| | ||| | ||| |||| ||| Sbjct 1955463 ATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGACCATCTTCCAGTTG 1955404 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 || || ||| | |||| || ||||| || || ||||||||||| || || ||||| || Sbjct 1955403 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCTT 1955344 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 || | || | || | ||| ||||| | ||| || || ||||| | || ||||| | Sbjct 1955343 AGCCTTCA-CGTTCTCAATGGTATCGGATGGCTCCACCTCCAGAGTGATGGTCTTGCCAG 1955285 Query 45316 TTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || |||||||| Sbjct 1955284 TCAGGGTCTTCACGAAGATTTGCAT 1955260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451957700227880