Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 1e-14 seq2 91.5 2e-13 >seq4 Length=22154029 Score = 95.1 bits (104), Expect = 1e-14 Identities = 343/524 (65%), Gaps = 12/524 (2%) Strand=Plus/Plus Query 127517 ACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 127576 |||||||| || || | |||||||| || ||||| | ||||| ||||| |||| Sbjct 3240615 ACAGCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGTCAGA 3240674 Query 127577 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 127636 |||||||| ||||| |||||||||| ||| || |||| ||| || ||||||| Sbjct 3240675 CCTGGCATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAAGAAG 3240734 Query 127637 ATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCA 127696 || |||||||| || ||||| | | | |||| |||| | || | || || | Sbjct 3240735 ATTCCCTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAA-GTTCGCCGCCTTCGATGA 3240793 Query 127697 AA-CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTC 127755 || ||| | |||||| | |||||| || || | || | || | || || | Sbjct 3240794 AATCCAAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATT 3240853 Query 127756 AAAGAGTTCCT-TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATG 127814 || || | | |||| ||| |||||| | || || |||| || || || Sbjct 3240854 GAACAGATAATCCCTTTGCTG-TGGATCCCTAATATATGTATCGATCAGCACGCTGTACA 3240912 Query 127815 TTTCGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCT 127872 | || ||| || ||| |||||| ||| | | |||||| | || |||||| | Sbjct 3240913 TCTCCGAGTGCAC--ATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCTTCGGT 3240970 Query 127873 TATCTGTACCTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACC 127931 ||| || ||||| | ||| || | | | ||||||| |||||| |||||||| Sbjct 3240971 TATTTGCACCTCCT-GGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCGGAGG 3241029 Query 127932 CAGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTC-GTTCAGGGTCTTC 127990 | ||||| || || || | || | || || | | || || || ||| | || | Sbjct 3241030 CGGCAAAGAAGGCGAGCACATGCGAGATAAAGTGACGCTCGTTATCAGTTAAACGT-GCC 3241088 Query 127991 CAGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||||| | | |||||| |||||||| ||||||||| ||||||| Sbjct 3241089 CAGTCCGCCAAATCCTTGGAGAGATCCACCTCCTCCACAGTCCA 3241132 >seq2 Length=4222574 Score = 91.5 bits (100), Expect = 2e-13 Identities = 186/270 (69%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 175900 TGTGAAGATGTACCT--CGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAAT 175957 |||||||||||| | || ||| || |||||| ||||| | | ||| || || || Sbjct 3935356 TGTGAAGATGTAACGAGCGCTTGC-ACA-ATCTTTACCACCGGTTAAACGTGTGCCGAAC 3935413 Query 175958 TGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTG 176017 ||||| | || || || | ||| |||||||| || || | | | | | ||||| || Sbjct 3935414 TGACCGCGAGGTTCTAGCAAATTTATATTGTTCGATCCGACAAAATTCTGTGCCAAATTT 3935473 Query 176018 ACAATCGT-ATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATA 176076 || || || ||| || ||||| | || ||||||||||| || ||| | |||||||| | Sbjct 3935474 ACTATAGTCATCTGC-AGGGACATCTCGCCGTGATGGTATGCTGACATTTCCGCCACCGA 3935532 Query 176077 CGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACAT 176136 | | | ||| ||||| || | ||| |||| ||| | |||||| | | |||| Sbjct 3935533 GCCGGATAGCTGAGCCACTTTTACCTCCCTCTTGTCGTTACGCTTGAAGCAAGTAAACAT 3935592 Query 176137 GACCTTTCTCTGTGAAGGCTTGAGGCCGTC 176166 ||||| | ||| |||||| ||||| || Sbjct 3935593 CACCTTACGCTGACCAGGCTTTAGGCCATC 3935622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613445442831480