Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq4 95.1 1e-14
seq2 91.5 2e-13
>seq4
Length=22154029
Score = 95.1 bits (104), Expect = 1e-14
Identities = 343/524 (65%), Gaps = 12/524 (2%)
Strand=Plus/Plus
Query 127517 ACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGA 127576
|||||||| || || | |||||||| || ||||| | ||||| ||||| ||||
Sbjct 3240615 ACAGCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGTCAGA 3240674
Query 127577 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAG 127636
|||||||| ||||| |||||||||| ||| || |||| ||| || |||||||
Sbjct 3240675 CCTGGCATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAAGAAG 3240734
Query 127637 ATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCA 127696
|| |||||||| || ||||| | | | |||| |||| | || | || || |
Sbjct 3240735 ATTCCCTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAA-GTTCGCCGCCTTCGATGA 3240793
Query 127697 AA-CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTC 127755
|| ||| | |||||| | |||||| || || | || | || | || || |
Sbjct 3240794 AATCCAAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATT 3240853
Query 127756 AAAGAGTTCCT-TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATG 127814
|| || | | |||| ||| |||||| | || || |||| || || ||
Sbjct 3240854 GAACAGATAATCCCTTTGCTG-TGGATCCCTAATATATGTATCGATCAGCACGCTGTACA 3240912
Query 127815 TTTCGCCGTGGACCATTTCATTATGGCA--CTGATACGCGTAGAAAGAGCGCGCTTCGCT 127872
| || ||| || ||| |||||| ||| | | |||||| | || |||||| |
Sbjct 3240913 TCTCCGAGTGCAC--ATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCTTCGGT 3240970
Query 127873 TATCTGTACCTCATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACC 127931
||| || ||||| | ||| || | | | ||||||| |||||| ||||||||
Sbjct 3240971 TATTTGCACCTCCT-GGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCGGAGG 3241029
Query 127932 CAGCAAAAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTC-GTTCAGGGTCTTC 127990
| ||||| || || || | || | || || | | || || || ||| | || |
Sbjct 3241030 CGGCAAAGAAGGCGAGCACATGCGAGATAAAGTGACGCTCGTTATCAGTTAAACGT-GCC 3241088
Query 127991 CAGTCGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034
||||| | | |||||| |||||||| ||||||||| |||||||
Sbjct 3241089 CAGTCCGCCAAATCCTTGGAGAGATCCACCTCCTCCACAGTCCA 3241132
>seq2
Length=4222574
Score = 91.5 bits (100), Expect = 2e-13
Identities = 186/270 (69%), Gaps = 6/270 (2%)
Strand=Plus/Plus
Query 175900 TGTGAAGATGTACCT--CGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCAAAT 175957
|||||||||||| | || ||| || |||||| ||||| | | ||| || || ||
Sbjct 3935356 TGTGAAGATGTAACGAGCGCTTGC-ACA-ATCTTTACCACCGGTTAAACGTGTGCCGAAC 3935413
Query 175958 TGACCACATGGCTCAAGGAGATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTG 176017
||||| | || || || | ||| |||||||| || || | | | | | ||||| ||
Sbjct 3935414 TGACCGCGAGGTTCTAGCAAATTTATATTGTTCGATCCGACAAAATTCTGTGCCAAATTT 3935473
Query 176018 ACAATCGT-ATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCCACATA 176076
|| || || ||| || ||||| | || ||||||||||| || ||| | |||||||| |
Sbjct 3935474 ACTATAGTCATCTGC-AGGGACATCTCGCCGTGATGGTATGCTGACATTTCCGCCACCGA 3935532
Query 176077 CGCCGCCAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACAT 176136
| | | ||| ||||| || | ||| |||| ||| | |||||| | | ||||
Sbjct 3935533 GCCGGATAGCTGAGCCACTTTTACCTCCCTCTTGTCGTTACGCTTGAAGCAAGTAAACAT 3935592
Query 176137 GACCTTTCTCTGTGAAGGCTTGAGGCCGTC 176166
||||| | ||| |||||| ||||| ||
Sbjct 3935593 CACCTTACGCTGACCAGGCTTTAGGCCATC 3935622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613445442831480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |