Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq4 167 4e-36 >seq4 Length=22154029 Score = 167 bits (184), Expect = 4e-36 Identities = 491/746 (66%), Gaps = 23/746 (3%) Strand=Plus/Plus Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703 || ||||||||||||||||| || ||||| |||| || || |||||||| |||| Sbjct 3240339 ACTTTCTTCTCGAAAAAGTTAGTTTTGCCATCCAGCGAGATCATCTCCATGAAGGTGAAT 3240398 Query 159704 GGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACA 159763 || |||||| | ||| || || ||||| || |||||| | || |||||| Sbjct 3240399 GGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACCAGCAGACGATCCGCCACA 3240458 Query 159764 AATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCT 159823 ||||| || || ||||| |||| || || || | || | ||||| || || Sbjct 3240459 AATTCAATATATTGGGACATCAATGCACAATTCATGCCAATCAAATTGACGGGCAGAGCA 3240518 Query 159824 TCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA-GACACGTTC 159882 || | |||||||| | |||||| || || || | | ||||| ||| || ||| || Sbjct 3240519 TCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCCGAGATAATCT-CGATGATACGCTC 3240577 Query 159883 GTACCCCGGC--TTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGC 159940 | ||| |||| | ||||| | |||| | | |||||||| || ||| Sbjct 3240578 CCGGCTGGGCCGTTGCACCAAATGCCGG-----AACATCATGACAGCAAAGTCACAATGC 3240632 Query 159941 AGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGC 160000 | |||||||| || ||||| ||||| ||||| | | || || ||||| | |||||| Sbjct 3240633 AAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGTCAGACCTGGCATCAGACCACGC 3240692 Query 160001 GGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCA 160060 || |||||||| || | ||||| ||||| || ||||| ||||||||||| ||| Sbjct 3240693 TTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAAGAAGATTCCCTCCACGGCAGCA 3240752 Query 160061 AACGCCACGAGCCTCTCACCAAA---AGAGGCGTTGGTGTCATG-GGTCCACCTTTTGGC 160116 ||||| | | ||||| ||||| | || || | ||| |||| || Sbjct 3240753 AACGCGATAATTCTCTCGCCAAAGTTCGCCGCCTTCG----ATGAAATCCAAGAGAGCGC 3240808 Query 160117 CCATTCAGCCTTCTTTGC--GATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCC 160174 ||| ||||||| || || || ||||| || | ||| || |||| ||| Sbjct 3240809 CCAATCAGCCT--TTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAGATAATCC 3240866 Query 160175 TGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACA 160234 | || |||| | || ||| | |||||| |||||| || | ||||||| Sbjct 3240867 CTTTGCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCCGAGTGCACA 3240926 Query 160235 TTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATA-CTGCACCTCCTG 160293 || || ||||| || |||||| |||||| | | || | | || ||||||||||| Sbjct 3240927 TTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAG-CTTCGGTTATTTGCACCTCCTG 3240985 Query 160294 TGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAA 160353 |||| | | ||||||| ||||||| | || |||| ||| |||||||| || | Sbjct 3240986 GCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCGGAGGCGGCAAAGAAGGCGAG 3241045 Query 160354 CACGTGAGAGATGAAATGTCTCTCGT 160379 ||| || ||||| || || | ||||| Sbjct 3241046 CACATGCGAGATAAAGTGACGCTCGT 3241071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795075157689680