Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3 149 1e-30 seq2 136 9e-27 seq6 84.2 5e-11 >seq3 Length=21835025 Score = 149 bits (164), Expect = 1e-30 Identities = 164/218 (75%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || ||||| ||||||||||| |||| |||||||||| |||||| | |||||| Sbjct 1955069 AGGACCAGATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAAGTGCGACCATCT 1955010 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| ||||| ||||||||||| ||||||||||| || || ||| ||||| || Sbjct 1955009 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTATCT 1954950 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| || | ||| || | | || || |||| ||||| ||| Sbjct 1954949 TGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAGGGTGATGGTC 1954890 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || ||||| | |||||| || || || || |||||| Sbjct 1954889 TTTCCCGTCAAAGTTTTAACGAAGATCTG---CATTTT 1954855 Score = 131 bits (144), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| |||||||| || | ||||| || | ||| || | ||||||||||| ||| Sbjct 1955462 TGAAGAGTAGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGACCATCTTCCAGTTGC 1955403 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||||||||| ||||||||||| || || ||| ||||| ||||||||||| Sbjct 1955402 TTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCTTA 1955343 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||||| || | ||| || | || || || |||| ||||| ||||| || || Sbjct 1955342 GCCTTCACGTTCTCAATGGTATCGGATGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTC 1955283 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| Sbjct 1955282 AGGGTCTTCACGAAGATTTG 1955263 >seq2 Length=4222574 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| | ||| |||||||| || | ||||||||| | | ||| | |||||| Sbjct 180280 AGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGATAGAGTGCGTCCATCC 180221 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| ||||| ||||||||||| || || || |||||| ||| Sbjct 180220 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATCCCTTCTTTGTCC 180161 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || ||||| || || ||| Sbjct 180160 TGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAATGGTC 180101 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || ||||||||||| || || ||||| |||||| Sbjct 180100 TTGCCGGTGAGAGTTTTMACGAAGATTTG---CATTTT 180066 >seq6 Length=21059900 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| | ||| |||||||| || | ||||||||| | || ||| | ||||| Sbjct 7471152 AGCACCAAGTGTAAAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGCCCATCC 7471211 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||||| || |||||||| | ||||||||| || || Sbjct 7471212 TCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGG 7471252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178799959974551