Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 7e-16 seq3 87.8 1e-12 >seq2 Length=4222574 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/236 (69%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 39484 CAATCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTA 39543 |||| || ||| || |||| ||| || || || ||||||||| || || || || || Sbjct 180303 CAATGAT-GCCACCACGCAGACGGAGCACTAAGTGCAAAGTGGACTCCTTCTGAATGTTG 180245 Query 39544 TAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGA 39603 || |||| | | |||| |||| |||| || || ||| |||| || | |||||||||| Sbjct 180244 TAGTCGGATAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGA 180185 Query 39604 TCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCG 39663 || | || | ||||||||||| || || || | || | | ||||| | | Sbjct 180184 TCTGGTGGGATCCCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAG 180125 Query 39664 CTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || ||||| ||||| || || || || | |||||| |||||||| ||||| Sbjct 180124 GGCTCGACCTCCAAGGTAATGGTCTTGCCGGTGAGAGTTTTMACGAAGATTTGCAT 180069 >seq3 Length=21835025 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| ||| || |||||||| | ||| || || || ||||| ||||||| Sbjct 1955487 GCCACCACGCAGACGTAGAACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGA 1955428 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| |||| |||| ||| || ||| | || || | |||||||||||| | ||| Sbjct 1955427 CAAGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 1955368 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||| ||||| || || || | || | | || || | ||||| Sbjct 1955367 AATGCCTTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCCAC 1955308 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||| || || || || || | || || |||||||| ||||| Sbjct 1955307 CTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1955260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347335507084949