Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq4 345 4e-90
seq2 129 6e-25
seq6 89.7 5e-13
>seq4
Length=22154029
Score = 345 bits (382), Expect = 4e-90
Identities = 572/824 (69%), Gaps = 4/824 (0%)
Strand=Plus/Plus
Query 132606 TTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGT 132665
||||||||| || || || ||||| ||||| |||||||| || |||| || || | |
Sbjct 3240326 TTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCATCCAGCGAGATCATCTC 3240385
Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAG 132725
||| || || || || || |||||| ||| | || || || |||||
Sbjct 3240386 CATGAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACCAGCAG 3240445
Query 132726 CCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACG 132785
| || ||||| || || || ||||| ||||| | | ||||| | || | || |
Sbjct 3240446 ACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAATTCATGCCAATCAAATT 3240505
Query 132786 CACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTC 132845
|| ||||| || || |||||||| |||||| |||| || || || | || || ||
Sbjct 3240506 GACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCCGAGATAATCTC 3240565
Query 132846 CCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTC 132905
| | ||| || ||| |||||||||||||||||| |||||||| | |||||||||
Sbjct 3240566 GATGATACGCTCCCGGCTGGGCCGTTGCACCAAATGCCGGAACATCATGACAGCAAAGTC 3240625
Query 132906 GCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAG 132965
||||||||||||||||| | || || | || ||| ||| |||| || ||||| ||
Sbjct 3240626 ACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGTCAGACCTGGCATCAG 3240685
Query 132966 GCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGAC 133025
|| || || || |||||||| || | ||| || || || ||||||| ||||| ||
Sbjct 3240686 ACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAAGAAGATTCCCTCCAC 3240745
Query 133026 GGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAG 133085
||| || || || | | | |||||| || | || | || | ||||| ||
Sbjct 3240746 GGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCCTTCGATGAAATCCAAGAGAG 3240805
Query 133086 CGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAG 133145
|||||| || |||||| ||||| ||||| ||||| ||||| || |||| | |
Sbjct 3240806 CGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAGA--TAA 3240863
Query 133146 TTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGT 133203
| || | | | ||| | | | || || ||||| || ||||| ||||||||
Sbjct 3240864 TCCCTTTGCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCCGAGTGC 3240923
Query 133204 ACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCT 133263
|| ||||||||||| ||||||||||| || || || || || ||| | ||||| ||
Sbjct 3240924 ACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGCACCTCC 3240983
Query 133264 TGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCC 133323
|| ||| |||||||||||||| || || || ||||| ||| |||||| || |||||
Sbjct 3240984 TGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCGGAGGCGGCAAAGAAGGCG 3241043
Query 133324 AGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCC 133383
||||| ||| ||| || || |||||||| || | || || ||||||| | |||
Sbjct 3241044 AGCACATGCGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCCGCCAAATCC 3241103
Query 133384 TTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427
||||| || ||||||||||| || ||||| || || ||||||||
Sbjct 3241104 TTGGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGCCTCGGC 3241147
>seq2
Length=4222574
Score = 129 bits (142), Expect = 6e-25
Identities = 167/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
||||||||||| ||||| ||||| ||||| ||||| ||||| ||| | || |||||| ||
Sbjct 180066 AAAATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGCCC 180125
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | | || | || |||| |||||||| || || || | ||
Sbjct 180126 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCACCAGAT 180185
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| || || | || ||||| |||||||| || | ||||| || |||||||
Sbjct 180186 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGACTAC 180245
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| || ||||| | || |||| || ||||| ||| || | || |||
Sbjct 180246 AACATTCAGAAGGAGTCCACTTTGCACTTAGTGCTCCGTCTGCGTGGTGGC 180296
>seq6
Length=21059900
Score = 89.7 bits (98), Expect = 5e-13
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| |||||| | || || ||||| | || | ||| |||||
Sbjct 7471279 AAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGCAAG 7471220
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|||||||| || | |||||| || |||||||||||| || ||||| | || | ||
Sbjct 7471219 CAGCTGGAGGATGGGCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACTTTACAC 7471160
Query 38448 TTGGTGCTGCGT 38459
|||||||| |||
Sbjct 7471159 TTGGTGCTCCGT 7471148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500122451355520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |