Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4 345 4e-90 seq2 129 6e-25 seq6 89.7 5e-13 >seq4 Length=22154029 Score = 345 bits (382), Expect = 4e-90 Identities = 572/824 (69%), Gaps = 4/824 (0%) Strand=Plus/Plus Query 132606 TTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGT 132665 ||||||||| || || || ||||| ||||| |||||||| || |||| || || | | Sbjct 3240326 TTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCATCCAGCGAGATCATCTC 3240385 Query 132666 CATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAG 132725 ||| || || || || || |||||| ||| | || || || ||||| Sbjct 3240386 CATGAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGTTCCACCAGCAG 3240445 Query 132726 CCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACG 132785 | || ||||| || || || ||||| ||||| | | ||||| | || | || | Sbjct 3240446 ACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAATTCATGCCAATCAAATT 3240505 Query 132786 CACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTC 132845 || ||||| || || |||||||| |||||| |||| || || || | || || || Sbjct 3240506 GACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCCGAGATAATCTC 3240565 Query 132846 CCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTC 132905 | | ||| || ||| |||||||||||||||||| |||||||| | ||||||||| Sbjct 3240566 GATGATACGCTCCCGGCTGGGCCGTTGCACCAAATGCCGGAACATCATGACAGCAAAGTC 3240625 Query 132906 GCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAG 132965 ||||||||||||||||| | || || | || ||| ||| |||| || ||||| || Sbjct 3240626 ACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGTCAGACCTGGCATCAG 3240685 Query 132966 GCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGAC 133025 || || || || |||||||| || | ||| || || || ||||||| ||||| || Sbjct 3240686 ACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAAGAAGATTCCCTCCAC 3240745 Query 133026 GGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAG 133085 ||| || || || | | | |||||| || | || | || | ||||| || Sbjct 3240746 GGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCCTTCGATGAAATCCAAGAGAG 3240805 Query 133086 CGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAG 133145 |||||| || |||||| ||||| ||||| ||||| ||||| || |||| | | Sbjct 3240806 CGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAGA--TAA 3240863 Query 133146 TTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGT 133203 | || | | | ||| | | | || || ||||| || ||||| |||||||| Sbjct 3240864 TCCCTTTGCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCCGAGTGC 3240923 Query 133204 ACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCT 133263 || ||||||||||| ||||||||||| || || || || || ||| | ||||| || Sbjct 3240924 ACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGCACCTCC 3240983 Query 133264 TGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCC 133323 || ||| |||||||||||||| || || || ||||| ||| |||||| || ||||| Sbjct 3240984 TGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCGGAGGCGGCAAAGAAGGCG 3241043 Query 133324 AGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCC 133383 ||||| ||| ||| || || |||||||| || | || || ||||||| | ||| Sbjct 3241044 AGCACATGCGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCCGCCAAATCC 3241103 Query 133384 TTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 ||||| || ||||||||||| || ||||| || || |||||||| Sbjct 3241104 TTGGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGCCTCGGC 3241147 >seq2 Length=4222574 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| ||||| ||||| ||||| ||||| ||| | || |||||| || Sbjct 180066 AAAATGCAAATCTTCGTKAAAACTCTCACCGGCAAGACCATTACCTTGGAGGTCGAGCCC 180125 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| |||||||| || || || | || Sbjct 180126 TCTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCACCAGAT 180185 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | || ||||| |||||||| || | ||||| || ||||||| Sbjct 180186 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGACGCACTCTATCCGACTAC 180245 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||||| | || |||| || ||||| ||| || | || ||| Sbjct 180246 AACATTCAGAAGGAGTCCACTTTGCACTTAGTGCTCCGTCTGCGTGGTGGC 180296 >seq6 Length=21059900 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| |||||| | || || ||||| | || | ||| ||||| Sbjct 7471279 AAGATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAGCGTTTGATCTTCGCTGGCAAG 7471220 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | |||||| || |||||||||||| || ||||| | || | || Sbjct 7471219 CAGCTGGAGGATGGGCGCACTCTGTCCGACTACAACATTCAGAAGGAGTCTACTTTACAC 7471160 Query 38448 TTGGTGCTGCGT 38459 |||||||| ||| Sbjct 7471159 TTGGTGCTCCGT 7471148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500122451355520