Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq1 217 1e-50
seq2244 87.8 1e-11
>seq1
Length=24697304
Score = 217 bits (240), Expect = 1e-50
Identities = 570/865 (66%), Gaps = 6/865 (1%)
Strand=Plus/Plus
Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910
|||| | || ||||||| ||||| | ||||| | | || || || || || || |
Sbjct 8900778 AATCGGTACCCTCGAACAGCGAATCGATCTCAATGCTCGCCTGGGTAGATGAGGAAAGAG 8900837
Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--T 517968
||| || ||||| ||||| || || | || | || | || ||| ||| | |
Sbjct 8900838 TACGCTTTGCACGCTCACAGGCAGTGCGCAGACGACGCAGAGCAC--GCTTGTTGGTGGT 8900895
Query 517969 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 518028
|| |||| | || | || | |||||| || | ||| | || || |||||||| ||
Sbjct 8900896 CAGATCTTTCTTGTGCTTGCGCTTGAACTCCTGCACAAAGTGAGTGACTAGACGATTGTC 8900955
Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088
||||| ||||| ||||| | || | || | |||| | | || | ||| | || ||
Sbjct 8900956 GAAATCCTCACCACCCAAATGGGTGTCACCAGCAGTAGATTTGACCTCGAAGATGCCGTC 8901015
Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148
|||| || | || | |||||| || ||||| |||| ||| ||||| | |||||
Sbjct 8901016 ATCAATCGAAAGAATGGAGACATCAAAAGTACCACCGCCCAAATCGAAAATCAACACATT 8901075
Query 518149 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 518208
|| | || || || || ||||| || | || || |||||||| |||||
Sbjct 8901076 ACGCTCGCCAACAGCCTTCTTGTCCAGGCCATAGGCGATGGCCGCGGCAGTTGGCTCATT 8901135
Query 518209 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 518268
||||| | ||| || || | ||| || || | || ||||| || || || || | ||
Sbjct 8901136 GATAATACGCAATACGTTCAAACCGGCGATGGTGCCAGCATCCTTGGTTGCCTGACGCTG 8901195
Query 518269 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATA 518328
||||||||| ||||| || || ||||| || ||||||| || || || || | ||
Sbjct 8901196 TGAATCGTTGAAATAGGCGGGCACAGTGATGACGGCATTGGTAACCGTCTTGCCCAGGTA 8901255
Query 518329 AGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATA 518388
|| || || | ||||| || | || | ||| || || || | || |||||| |
Sbjct 8901256 CGCCTCGGCGGTCTCCTTCATCTTGGTCAACACCATGGAGGAGATCTCCTC-GGGGAAGA 8901314
Query 518389 TTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 518447
| ||| |||| | || | || || | | || || | |||| || | |
Sbjct 8901315 AAGTCTTCTTCTCATCCTTGTACGTAACCTCGATCTTGGGCTTGCCATCAACGTTCACGA 8901374
Query 518448 CTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 518507
| | || ||||||| |||||||| || || || |||| || | | |||||
Sbjct 8901375 CCTCGAAAGGCCAGTGCTTCATATCAGACTGCACGGCCGCATCATCGAATTTGCGACCAA 8901434
Query 518508 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTG 518567
| | || || ||||| || || || | |||||| || || || | || | ||||| |
Sbjct 8901435 TCAGACGCTTAGCATCGAAGATTGTTTGGGTTGGGTTCATGGCCACCTGGTTCTTGGCGG 8901494
Query 518568 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 518627
| || ||||||| | | || ||||| || || | |||||| ||||| || || |||||||
Sbjct 8901495 CGTCACCAATCAAACGCTCCGTCTCCGTGAAGGCAACATAAGATGGGGTGGTACGATTAC 8901554
Query 518628 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 518687
| ||||| || ||||| || ||||| || |||| || | ||||| || ||| | |
Sbjct 8901555 CCTGATCGTTGGCAATGATCTCAACCTTGCCATGCTGGAACACACCCACGCAAGAGTAGG 8901614
Query 518688 TTGTTCCTAAATCAATACCAATAGC 518712
|||| || ||||||||||||| |||
Sbjct 8901615 TTGTGCCCAAATCAATACCAACAGC 8901639
Score = 105 bits (116), Expect = 5e-17
Identities = 118/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 518555 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 518614
|||| ||| |||||||| ||||| || | ||||| || |||| | ||||| || ||
Sbjct 3429298 TGATTTTTAGCTGCATCGCCAATTAGGCGCTCTGTGTCGTTAAAGGCCACATACGAGGGC 3429357
Query 518615 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 518674
|| || ||||| ||||||||||| |||||||| ||||||||| || ||||| |||||
Sbjct 3429358 GTCGTCCGATTGCCTTGATCATTGGCAATAATCTCAACTTTATTGTTCTGCCAAACACCC 3429417
Query 518675 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712
|| || | || || || | ||| |||||||| ||
Sbjct 3429418 ACGCATGAGTAGGTGGTGCCCAGATCGATACCAATTGC 3429455
>seq2244
Length=2929
Score = 87.8 bits (96), Expect = 1e-11
Identities = 124/173 (72%), Gaps = 1/173 (1%)
Strand=Plus/Plus
Query 870799 TATT-GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGAT 870857
|||| || || | |||||||||||| || || ||| |||||||| | || || ||| | |
Sbjct 2361 TATTAGTTGACTTTTCTTCTCCAAACATCGCAAAACAAATGCATGTCGGTCACTTACGTT 2420
Query 870858 CAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATC 870917
| || || ||||| || || || || ||| | | ||| | ||| ||||| ||
Sbjct 2421 CCACCATAATTGGGGAGTCAATCTGCAGGCTTCTTGAATTTCTACAACATGATGTAATTC 2480
Query 870918 GTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTAT 870970
| || |||||| | || ||||||||||| || || |||||| | || ||| ||
Sbjct 2481 GCATCAATCATCTCGGGGATTGGGGAACGCAGTTTGGTATGCTTATAGCTCAT 2533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780422783613418
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |