Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1 217 1e-50 seq2244 87.8 1e-11 >seq1 Length=24697304 Score = 217 bits (240), Expect = 1e-50 Identities = 570/865 (66%), Gaps = 6/865 (1%) Strand=Plus/Plus Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 |||| | || ||||||| ||||| | ||||| | | || || || || || || | Sbjct 8900778 AATCGGTACCCTCGAACAGCGAATCGATCTCAATGCTCGCCTGGGTAGATGAGGAAAGAG 8900837 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--T 517968 ||| || ||||| ||||| || || | || | || | || ||| ||| | | Sbjct 8900838 TACGCTTTGCACGCTCACAGGCAGTGCGCAGACGACGCAGAGCAC--GCTTGTTGGTGGT 8900895 Query 517969 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 518028 || |||| | || | || | |||||| || | ||| | || || |||||||| || Sbjct 8900896 CAGATCTTTCTTGTGCTTGCGCTTGAACTCCTGCACAAAGTGAGTGACTAGACGATTGTC 8900955 Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088 ||||| ||||| ||||| | || | || | |||| | | || | ||| | || || Sbjct 8900956 GAAATCCTCACCACCCAAATGGGTGTCACCAGCAGTAGATTTGACCTCGAAGATGCCGTC 8901015 Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148 |||| || | || | |||||| || ||||| |||| ||| ||||| | ||||| Sbjct 8901016 ATCAATCGAAAGAATGGAGACATCAAAAGTACCACCGCCCAAATCGAAAATCAACACATT 8901075 Query 518149 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 518208 || | || || || || ||||| || | || || |||||||| ||||| Sbjct 8901076 ACGCTCGCCAACAGCCTTCTTGTCCAGGCCATAGGCGATGGCCGCGGCAGTTGGCTCATT 8901135 Query 518209 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 518268 ||||| | ||| || || | ||| || || | || ||||| || || || || | || Sbjct 8901136 GATAATACGCAATACGTTCAAACCGGCGATGGTGCCAGCATCCTTGGTTGCCTGACGCTG 8901195 Query 518269 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATA 518328 ||||||||| ||||| || || ||||| || ||||||| || || || || | || Sbjct 8901196 TGAATCGTTGAAATAGGCGGGCACAGTGATGACGGCATTGGTAACCGTCTTGCCCAGGTA 8901255 Query 518329 AGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATA 518388 || || || | ||||| || | || | ||| || || || | || |||||| | Sbjct 8901256 CGCCTCGGCGGTCTCCTTCATCTTGGTCAACACCATGGAGGAGATCTCCTC-GGGGAAGA 8901314 Query 518389 TTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 518447 | ||| |||| | || | || || | | || || | |||| || | | Sbjct 8901315 AAGTCTTCTTCTCATCCTTGTACGTAACCTCGATCTTGGGCTTGCCATCAACGTTCACGA 8901374 Query 518448 CTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 518507 | | || ||||||| |||||||| || || || |||| || | | ||||| Sbjct 8901375 CCTCGAAAGGCCAGTGCTTCATATCAGACTGCACGGCCGCATCATCGAATTTGCGACCAA 8901434 Query 518508 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTG 518567 | | || || ||||| || || || | |||||| || || || | || | ||||| | Sbjct 8901435 TCAGACGCTTAGCATCGAAGATTGTTTGGGTTGGGTTCATGGCCACCTGGTTCTTGGCGG 8901494 Query 518568 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 518627 | || ||||||| | | || ||||| || || | |||||| ||||| || || ||||||| Sbjct 8901495 CGTCACCAATCAAACGCTCCGTCTCCGTGAAGGCAACATAAGATGGGGTGGTACGATTAC 8901554 Query 518628 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 518687 | ||||| || ||||| || ||||| || |||| || | ||||| || ||| | | Sbjct 8901555 CCTGATCGTTGGCAATGATCTCAACCTTGCCATGCTGGAACACACCCACGCAAGAGTAGG 8901614 Query 518688 TTGTTCCTAAATCAATACCAATAGC 518712 |||| || ||||||||||||| ||| Sbjct 8901615 TTGTGCCCAAATCAATACCAACAGC 8901639 Score = 105 bits (116), Expect = 5e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 518555 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 518614 |||| ||| |||||||| ||||| || | ||||| || |||| | ||||| || || Sbjct 3429298 TGATTTTTAGCTGCATCGCCAATTAGGCGCTCTGTGTCGTTAAAGGCCACATACGAGGGC 3429357 Query 518615 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 518674 || || ||||| ||||||||||| |||||||| ||||||||| || ||||| ||||| Sbjct 3429358 GTCGTCCGATTGCCTTGATCATTGGCAATAATCTCAACTTTATTGTTCTGCCAAACACCC 3429417 Query 518675 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 || || | || || || | ||| |||||||| || Sbjct 3429418 ACGCATGAGTAGGTGGTGCCCAGATCGATACCAATTGC 3429455 >seq2244 Length=2929 Score = 87.8 bits (96), Expect = 1e-11 Identities = 124/173 (72%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 870799 TATT-GTCGATTATTCTTCTCCAAATATTGCTAAAGAAATGCATATTGGACATTTAAGAT 870857 |||| || || | |||||||||||| || || ||| |||||||| | || || ||| | | Sbjct 2361 TATTAGTTGACTTTTCTTCTCCAAACATCGCAAAACAAATGCATGTCGGTCACTTACGTT 2420 Query 870858 CAACTATTATTGGTGAATCTATTTGTAGGGTATTAGAAATGTGTGGACACGATGTTTATC 870917 | || || ||||| || || || || ||| | | ||| | ||| ||||| || Sbjct 2421 CCACCATAATTGGGGAGTCAATCTGCAGGCTTCTTGAATTTCTACAACATGATGTAATTC 2480 Query 870918 GTATTAATCATGTGGGTGATTGGGGAACTCAATTCGGTATGTTAATTGCTTAT 870970 | || |||||| | || ||||||||||| || || |||||| | || ||| || Sbjct 2481 GCATCAATCATCTCGGGGATTGGGGAACGCAGTTTGGTATGCTTATAGCTCAT 2533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780422783613418