Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2 125 9e-24 seq4 95.1 2e-14 >seq2 Length=4222574 Score = 125 bits (138), Expect = 9e-24 Identities = 369/561 (66%), Gaps = 11/561 (2%) Strand=Plus/Plus Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145 |||||||| || | || | |||||||| ||||| || ||||| | ||||| | | | Sbjct 4214744 CGCGATCTGTTTTTTGCATTGTGGATTCCTGATCTTTTTATGAAACGTGTTGAAGCCAAT 4214803 Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAG 112205 | ||||||| || | |||||| | || || || || | |||| |||||| Sbjct 4214804 GAAGATTGGTCACTAATGTGTCCACATAAATGTCCTGGCCTTCCAGATGTTTGGGGTGAA 4214863 Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCA 112265 || |||||| ||| || | || || || ||||| | || |||| | ||| | | | Sbjct 4214864 GATTTTGAAAACCTTTATATCAAATATGAACAAGAAGGACGAGCGAAT-CGA-GTTATTA 4214921 Query 112266 --GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATA 112323 ||| | | ||| || ||| || | |||||| ||||| |||||||| || | Sbjct 4214922 AGGCTCAATCTCTTTGGTTTGCCATTATCGAATCTCAAGTAGAGACGGGTACACCCTACA 4214981 Query 112324 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 112383 || | | || || | |||||| ||| || || ||| | ||| | || || || Sbjct 4214982 TGTTATTTAAGGATTCGTGTAACAGAAAAAGCAACCAACAAAATGTTGGAACTATAAAAT 4215041 Query 112384 GTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 112443 | || || || |||||||| | || | | ||| |||||| | |||||||||| Sbjct 4215042 GCAGTAATCTGTGCACAGAAATAGTTGAGTATTCAGCACCAGATGAAATAGCTGTGTGTA 4215101 Query 112444 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATG 112503 | | || ||||| || || | || |||| | || ||| | | ||| | | Sbjct 4215102 ATTTGGCGTCAATTGCACTTAATATGTTTGTGACGCATGA---AAAATCGTATGACTTTA 4215158 Query 112504 AAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAA 112563 |||| || | ||||| || |||| ||| || |||||| |||||| | | ||||||| || Sbjct 4215159 AAAAGCTTAAAGAAGTAACTAAAATTGTTACGAAAAACTTAAACAAAATAATTGATATAA 4215218 Query 112564 ATTTTTACCCCGTTG--AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCT 112621 ||| || ||| ||| ||| ||| ||||| ||| | | |||||||| ||||| | Sbjct 4215219 ATTACTA-CCCTTTGCCAGA-AGCTAAAAAATCAAATTTACGCCACCGTCCTATTGGAAT 4215276 Query 112622 CGGTGTCCAAGGTCTCGCGGA 112642 || |||||||| | ||||| Sbjct 4215277 TGGAGTCCAAGGGTTTGCGGA 4215297 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 13597 TCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 13656 |||||||||| || |||||||| ||| ||| |||||| |||| | ||||| || || Sbjct 1458205 TCTATCAAGCGTCCACATCAGAGCTGTATGGCAAGGTTGTGGAGACGCCACAGAATGAAC 1458264 Query 13657 AGACACCCTTCTACCCACGCTCGGTCTACGG 13687 ||||||||||||||||||| ||| ||| || Sbjct 1458265 AGACACCCTTCTACCCACGATCGCCCTATGG 1458295 >seq4 Length=22154029 Score = 95.1 bits (104), Expect = 2e-14 Identities = 326/501 (65%), Gaps = 8/501 (2%) Strand=Plus/Minus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGAA 101876 ||||||| || ||||| |||||||| |||||||||| || ||| | ||| ||| Sbjct 3241132 TGGACTGTGGAGGAGGTGGATCTCTCCAAGGATTTGGCGGACTGGGCACGTTTAACTGAT 3241073 Query 101877 AATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTT 101936 || || | || || | | || || |||||||| | |||||||| |||||| Sbjct 3241072 AACGAGCGTCACTTTATCTCGCATGTGCTCGCCTTCTTTGCCGCCTCCGATGGCATTGTT 3241013 Query 101937 TTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCTTTC 101996 ||||||| | | ||| | ||||||||| | ||||| | | |||| Sbjct 3241012 AATGAGAATCTGGTCGAGCGCTTCAGCCAGGAGGTGCAAATAACCGAAGCTCGTTGTTTC 3240953 Query 101997 TATGCGTATCAA--TGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAG 102054 |||| | |||| || ||| ||| ||||| ||||| ||||| || || | Sbjct 3240952 TATGGCTTTCAAATTGCCATGGAGAAT--GTGCACTCGGAGATGTACAGCGTGCTGATCG 3240895 Query 102055 ACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTC 102114 | | ||||||| |||| | | | | | || || | ||||| ||||| | | Sbjct 3240894 ATACATATATTAGGGATCCACAGCAAAGGGATTATCTGTTCAATGCCATTGAAACAATGC 3240835 Query 102115 CATGTATTCAAAAGAAAG-CGGATTGGGCTATGAAGTGG-TTTGATACAAAGTCGCGTTC 102172 | | | ||| ||||| | |||||||| | ||| ||| || || | ||| | Sbjct 3240834 CCGCTGT-CAAGCGAAAGGCTGATTGGGCGCTCTCTTGGATTTCATCGAAGGCGGCGAAC 3240776 Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 || || ||| || | |||| ||||| || ||||| ||||||||| || ||| Sbjct 3240775 TTTGGC-GAGAGAATTATCGCGTTTGCTGCCGTGGAGGGAATCTTCTTCAGCGGAAGCTT 3240717 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 | | || | |||||| |||||||| ||||| ||||||||||| |||||||| || Sbjct 3240716 TGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTGATGCCAGGTCTGACGTTCTCCAATGA 3240657 Query 102293 GCTTATCTCTCGTGACGAGGG 102313 | | ||||| || |||||||| Sbjct 3240656 GTTGATCTCACGCGACGAGGG 3240636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620679914518160