Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq2 125 9e-24
seq4 95.1 2e-14
>seq2
Length=4222574
Score = 125 bits (138), Expect = 9e-24
Identities = 369/561 (66%), Gaps = 11/561 (2%)
Strand=Plus/Plus
Query 112086 CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGT 112145
|||||||| || | || | |||||||| ||||| || ||||| | ||||| | | |
Sbjct 4214744 CGCGATCTGTTTTTTGCATTGTGGATTCCTGATCTTTTTATGAAACGTGTTGAAGCCAAT 4214803
Query 112146 GGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAG 112205
| ||||||| || | |||||| | || || || || | |||| ||||||
Sbjct 4214804 GAAGATTGGTCACTAATGTGTCCACATAAATGTCCTGGCCTTCCAGATGTTTGGGGTGAA 4214863
Query 112206 GAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCA 112265
|| |||||| ||| || | || || || ||||| | || |||| | ||| | | |
Sbjct 4214864 GATTTTGAAAACCTTTATATCAAATATGAACAAGAAGGACGAGCGAAT-CGA-GTTATTA 4214921
Query 112266 --GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATA 112323
||| | | ||| || ||| || | |||||| ||||| |||||||| || |
Sbjct 4214922 AGGCTCAATCTCTTTGGTTTGCCATTATCGAATCTCAAGTAGAGACGGGTACACCCTACA 4214981
Query 112324 TGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGA 112383
|| | | || || | |||||| ||| || || ||| | ||| | || || ||
Sbjct 4214982 TGTTATTTAAGGATTCGTGTAACAGAAAAAGCAACCAACAAAATGTTGGAACTATAAAAT 4215041
Query 112384 GTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTA 112443
| || || || |||||||| | || | | ||| |||||| | ||||||||||
Sbjct 4215042 GCAGTAATCTGTGCACAGAAATAGTTGAGTATTCAGCACCAGATGAAATAGCTGTGTGTA 4215101
Query 112444 ACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATG 112503
| | || ||||| || || | || |||| | || ||| | | ||| | |
Sbjct 4215102 ATTTGGCGTCAATTGCACTTAATATGTTTGTGACGCATGA---AAAATCGTATGACTTTA 4215158
Query 112504 AAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAA 112563
|||| || | ||||| || |||| ||| || |||||| |||||| | | ||||||| ||
Sbjct 4215159 AAAAGCTTAAAGAAGTAACTAAAATTGTTACGAAAAACTTAAACAAAATAATTGATATAA 4215218
Query 112564 ATTTTTACCCCGTTG--AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCT 112621
||| || ||| ||| ||| ||| ||||| ||| | | |||||||| ||||| |
Sbjct 4215219 ATTACTA-CCCTTTGCCAGA-AGCTAAAAAATCAAATTTACGCCACCGTCCTATTGGAAT 4215276
Query 112622 CGGTGTCCAAGGTCTCGCGGA 112642
|| |||||||| | |||||
Sbjct 4215277 TGGAGTCCAAGGGTTTGCGGA 4215297
Score = 84.2 bits (92), Expect = 3e-11
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 13597 TCTATCAAGCCTCTTCATCAGAGATGTTTGGTAAGGTTAAGGAGTCACCACAAAACGAGG 13656
|||||||||| || |||||||| ||| ||| |||||| |||| | ||||| || ||
Sbjct 1458205 TCTATCAAGCGTCCACATCAGAGCTGTATGGCAAGGTTGTGGAGACGCCACAGAATGAAC 1458264
Query 13657 AGACACCCTTCTACCCACGCTCGGTCTACGG 13687
||||||||||||||||||| ||| ||| ||
Sbjct 1458265 AGACACCCTTCTACCCACGATCGCCCTATGG 1458295
>seq4
Length=22154029
Score = 95.1 bits (104), Expect = 2e-14
Identities = 326/501 (65%), Gaps = 8/501 (2%)
Strand=Plus/Minus
Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGAA 101876
||||||| || ||||| |||||||| |||||||||| || ||| | ||| |||
Sbjct 3241132 TGGACTGTGGAGGAGGTGGATCTCTCCAAGGATTTGGCGGACTGGGCACGTTTAACTGAT 3241073
Query 101877 AATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTT 101936
|| || | || || | | || || |||||||| | |||||||| ||||||
Sbjct 3241072 AACGAGCGTCACTTTATCTCGCATGTGCTCGCCTTCTTTGCCGCCTCCGATGGCATTGTT 3241013
Query 101937 TTTGAGAATATCAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCTTTC 101996
||||||| | | ||| | ||||||||| | ||||| | | ||||
Sbjct 3241012 AATGAGAATCTGGTCGAGCGCTTCAGCCAGGAGGTGCAAATAACCGAAGCTCGTTGTTTC 3240953
Query 101997 TATGCGTATCAA--TGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAG 102054
|||| | |||| || ||| ||| ||||| ||||| ||||| || || |
Sbjct 3240952 TATGGCTTTCAAATTGCCATGGAGAAT--GTGCACTCGGAGATGTACAGCGTGCTGATCG 3240895
Query 102055 ACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTC 102114
| | ||||||| |||| | | | | | || || | ||||| ||||| | |
Sbjct 3240894 ATACATATATTAGGGATCCACAGCAAAGGGATTATCTGTTCAATGCCATTGAAACAATGC 3240835
Query 102115 CATGTATTCAAAAGAAAG-CGGATTGGGCTATGAAGTGG-TTTGATACAAAGTCGCGTTC 102172
| | | ||| ||||| | |||||||| | ||| ||| || || | ||| |
Sbjct 3240834 CCGCTGT-CAAGCGAAAGGCTGATTGGGCGCTCTCTTGGATTTCATCGAAGGCGGCGAAC 3240776
Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232
|| || ||| || | |||| ||||| || ||||| ||||||||| || |||
Sbjct 3240775 TTTGGC-GAGAGAATTATCGCGTTTGCTGCCGTGGAGGGAATCTTCTTCAGCGGAAGCTT 3240717
Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292
| | || | |||||| |||||||| ||||| ||||||||||| |||||||| ||
Sbjct 3240716 TGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTGATGCCAGGTCTGACGTTCTCCAATGA 3240657
Query 102293 GCTTATCTCTCGTGACGAGGG 102313
| | ||||| || ||||||||
Sbjct 3240656 GTTGATCTCACGCGACGAGGG 3240636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620679914518160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |