Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq3 165 2e-35 seq2 147 5e-30 >seq3 Length=21835025 Score = 165 bits (182), Expect = 2e-35 Identities = 167/216 (77%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || ||||| || || |||||||| || | | ||| | |||||||| Sbjct 1955066 ACCAGATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAAGTGCGACCATCTTCC 1955007 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || |||||||| || || || || ||||| ||||||||||| || |||||| Sbjct 1955006 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTATCTTGA 1954947 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||||||||||||| || ||| || || || ||||| | |||||| Sbjct 1954946 ATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAGGGTGATGGTCTTT 1954887 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTTATGGT 195147 || ||||||||||| ||||| | ||||||| |||| Sbjct 1954886 CCCGTCAAAGTTTTAACGAAGATCTGCATTT-TGGT 1954852 Score = 158 bits (174), Expect = 3e-33 Identities = 159/204 (78%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||| ||||| || |||||||||||||||| |||| || | |||||||| || || Sbjct 1955462 TGAAGAGTAGACTCCTTCTGAATATTGTAATCGGACAAG-GTGCGACCATCTTCCAGTTG 1955404 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||| ||||||||||| ||||| ||||| || Sbjct 1955403 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCTT 1955344 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| |||||||||||||| || || ||||| || || || | ||||| || || Sbjct 1955343 AGCCTTCACGTTCTCAATGGTATCGGATGGCTCCACCTCCAGAGTGATGGTCTTGCCAGT 1955284 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | |||||| Sbjct 1955283 CAGGGTCTTCACGAAGATTTGCAT 1955260 >seq2 Length=4222574 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||||||||| || ||||| ||||| |||| ||||| | ||||| || ||||| Sbjct 180272 GTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGATAGAGTGCGTCCATCCTCCAGCTG 180213 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || || || || ||||| || || ||||||||||| || || || Sbjct 180212 CTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATCCCTTCTTTGTCCTGGATCTT 180153 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| ||||| |||||||| || || || || | ||||| ||||| || || Sbjct 180152 GGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAATGGTCTTGCCGGT 180093 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 | |||||| ||||| | |||||||| Sbjct 180092 GAGAGTTTTMACGAAGATTTGCATTT 180067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109367124728651