Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq2 107 1e-18
seq3 82.4 5e-11
>seq2
Length=4222574
Score = 107 bits (118), Expect = 1e-18
Identities = 153/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|| ||||| | ||| || ||||||||||| ||||| || || | ||| |||| |||
Sbjct 180277 ACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGATAGAGTGCGTCCATCCTCC 180218
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || |||||||| || || || ||||| ||| | || | ||| || |||||
Sbjct 180217 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATCCCTTCTTTGTCCTGG 180158
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
||||| ||||| || || || | ||| || ||| || || | ||| ||||| |
Sbjct 180157 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAATGGTCT 180100
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
| || |||||||| || || ||||| ||||| ||
Sbjct 180099 TGCCGGTGAGAGTTTTMACGAAGATTTGCATTTT 180066
>seq3
Length=21835025
Score = 82.4 bits (90), Expect = 5e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| || || ||||| || | | || |||| ||||| || || ||||| ||
Sbjct 1955048 TCCTTCTGGATATTGTAGTCAGACAAAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAG 1954989
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||| ||| | || | || ||||| || |||||| ||||||
Sbjct 1954988 ATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTC 1954929
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | |||||| || | ||| ||||| |||||||| | ||| || ||
Sbjct 1954928 TCAATGGTATCGGAAGGCTCAACCTCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTAACG 1954869
Query 34971 AAGATCTGCATATTCGTA 34988
||||||||||| || |||
Sbjct 1954868 AAGATCTGCATTTTGGTA 1954851
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324601738530984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |