Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2 107 1e-18 seq3 82.4 5e-11 >seq2 Length=4222574 Score = 107 bits (118), Expect = 1e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 || ||||| | ||| || ||||||||||| ||||| || || | ||| |||| ||| Sbjct 180277 ACTAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGATAGAGTGCGTCCATCCTCC 180218 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || || ||||| ||| | || | ||| || ||||| Sbjct 180217 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATCCCTTCTTTGTCCTGG 180158 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | ||| || ||| || || | ||| ||||| | Sbjct 180157 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTAATGGTCT 180100 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || |||||||| || || ||||| ||||| || Sbjct 180099 TGCCGGTGAGAGTTTTMACGAAGATTTGCATTTT 180066 >seq3 Length=21835025 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| || | | || |||| ||||| || || ||||| || Sbjct 1955048 TCCTTCTGGATATTGTAGTCAGACAAAGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAG 1954989 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | || ||||| || |||||| |||||| Sbjct 1954988 ATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTATCTTGAATCTTGGCCTTGACGTTC 1954929 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | |||||| || | ||| ||||| |||||||| | ||| || || Sbjct 1954928 TCAATGGTATCGGAAGGCTCAACCTCCAGGGTGATGGTCTTTCCCGTCAAAGTTTTAACG 1954869 Query 34971 AAGATCTGCATATTCGTA 34988 ||||||||||| || ||| Sbjct 1954868 AAGATCTGCATTTTGGTA 1954851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324601738530984