Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 466 2e-126 seq4 223 4e-53 >seq2 Length=4222574 Score = 466 bits (516), Expect = 2e-126 Identities = 1210/1855 (65%), Gaps = 10/1855 (1%) Strand=Plus/Minus Query 46980 ACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTCTTT 47039 ||||| || | || | |||| ||||| |||||| || | ||||||||| || ||||| Sbjct 4216023 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 4215964 Query 47040 AAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAA 47099 | |||| |||| ||| ||||| || |||||||| |||| ||||||| | Sbjct 4215963 AGACCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGGTTCAGCT 4215904 Query 47100 ATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCT 47159 | |||||||| | ||| ||||| ||||||||||| || ||||| ||||| ||||| | | Sbjct 4215903 ACGTGAATATTGAAAGACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTT 4215844 Query 47160 AAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGG 47219 | | | | || |||||||| ||||||||||| | | ||| || | || Sbjct 4215843 ATAGTTGATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATTTCCTTCGGA 4215784 Query 47220 A--GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgttttttaattcattt 47276 | |||| | ||||||| || || || | ||| ||| |||| ||||| | || | Sbjct 4215783 ATTGATTCAATATTTTGTATTGAACCACGATTTGATATTATTTGATTTTTCATCTCGTCA 4215724 Query 47277 gaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTCT 47336 ||| | | |||| ||||| | | ||| | || || | ||||||||| Sbjct 4215723 TCCCACAAATCAAGTTCGGTTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCG 4215664 Query 47337 CCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTT 47396 || || | ||||| | | || || || ||||| || || | || ||||| || Sbjct 4215663 CCGGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTGTTG 4215604 Query 47397 CCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACT 47456 || | ||||| ||||| |||||||||||||||| ||||| | ||| |||||| || Sbjct 4215603 CCCATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACA 4215544 Query 47457 CCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACA 47516 |||| || |||| | ||| ||||||||||||| ||| | Sbjct 4215543 CCATGTTGCGCTATCGATTTTTTAAGAACATCCCAGTCCCAAAGATCTGTTGGCGATTTA 4215484 Query 47517 TTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAA 47576 ||||| | |||||| || | ||||||||| |||| ||| ||| ||| || | ||| Sbjct 4215483 TTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTTCCAACATAAGTCTCATAT 4215424 Query 47577 GGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCA 47636 || || | | || ||| | |||||| || ||||||| || | ||| ||||| ||||| Sbjct 4215423 GGTCCATCTCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTTCG 4215364 Query 47637 AATATTTTTATGTTTAGATTCCTTGCTTCTGATGA--TTCAAAAGGATANNNNNNNNNNN 47694 || || | |||| | ||| || |||| ||| ||| ||| Sbjct 4215363 AAAATCTGCTGATTTAAAAGAAATGCATC--ATGACTTTCGTAAGAATACCGCATTAATA 4215306 Query 47695 NNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAA 47754 || | || || || ||||| || ||||| ||||| || | || | ||| || Sbjct 4215305 TTAACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATT 4215246 Query 47755 ACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNN 47814 | ||||||||| || || || | |||||||| || ||||| |||| Sbjct 4215245 TTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTAA 4215186 Query 47815 NNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAAC---TTGTTATTTATAACAAACC 47871 | |||| | | || ||||| ||| || || | || | |||||| Sbjct 4215185 CAATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACA 4215126 Query 47872 TATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTA 47931 |||||||||| || || || | |||||| ||||||| |||| ||| | ||| | | Sbjct 4215125 TATTAAGTGCAATTGACGCCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAA 4215066 Query 47932 TTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNT 47991 |||||| | || ||||||| ||||| ||||| || | |||||| || || | Sbjct 4215065 CTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTC 4215006 Query 47992 TGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGA 48051 ||||||| | ||||| | | ||| | ||||| || || |||| |||||||| || | Sbjct 4215005 TGTTACACGAATCCTTAAATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAA 4214946 Query 48052 TAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATT 48111 | | ||||| || |||||| ||||| | ||| || ||||| |||| Sbjct 4214945 TGGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCGCTCGTCCTTCTTGTTCATATT 4214886 Query 48112 TAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAG 48171 | |||| | || ||||| || || || | |||| | |||||||||| || | Sbjct 4214885 TGATATAAAGGTTTTCAAAATCTTCACCCCAAACATCTGGAAGGCCAGGACATTTATGTG 4214826 Query 48172 GACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCC 48231 ||||||| | ||||||||| |||| || || | ||||||| | ||| || |||| Sbjct 4214825 GACACATTAGTGACCAATCTTCATTGGCTTCAACACGTTTCATAAAAAGATCAGGAATCC 4214766 Query 48232 AAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTT 48291 | | || | ||| | ||| | | | |||| || || ||| |||| ||||||| | Sbjct 4214765 ACAATGCAAAAAACAGATCGCGCGCCCGATGTTCCTCCTTTCCAGTATTTTTTTTAAGGT 4214706 Query 48292 CAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTC 48351 | | ||| || | | ||| | ||||| || ||||| || || || | | | || |||| Sbjct 4214705 CCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGCTCCAGGTC 4214646 Query 48352 GTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGA 48411 |||| ||| || ||||| | ||| | || ||| ||| |||||||||||||||| | Sbjct 4214645 TTTTACCACCGCCCTGATCGACATAACGTGCCACATTATTAAAAACTCTTAACATTGGTA 4214586 Query 48412 CAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTAC 48471 | | |||||||| |||| || ||||| |||| | |||| |||||| ||| Sbjct 4214585 CTAATCCATTTGAAGTACCGTTCGTTCCACAAATTGATGTTCCTTTAGCTCGAATACAGT 4214526 Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531 || | || || ||||||||| || || || | || || | | || | | Sbjct 4214525 GAACATTCAGTCCAATGCCACCTGCCGACTTTGAAATCATTGCGCATTGCTCAACTGATT 4214466 Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCG 48591 | |||| ||||| || |||| | ||| |||| ||||| || ||||| ||| | Sbjct 4214465 TAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAGAGAAAGCATGAAGACAATTGTG 4214406 Query 48592 GATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATA 48651 || | || ||| | ||| | ||||| ||||||||| |||| | ||| |||| Sbjct 4214405 GACGGTTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGATA 4214346 Query 48652 ACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACAC 48711 ||| || || ||||| | ||||||| ||||| |||||||||||||| |||| Sbjct 4214345 GCAAATTGTAGGTTTCCACTGCAGAATCAATATCTTCGCCATGTATACCTATAGCAACAC 4214286 Query 48712 GCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATT 48771 |||||| || || || |||||||| | ||||| ||||||||| | | || || Sbjct 4214285 GCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAGTAAGACC 4214226 Query 48772 TTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 || | ||| ||||| ||||| ||||| ||| ||| || ||||| ||||| Sbjct 4214225 GCTCAAGTGTCTTAAATCCAAAGTAGTTATATCCAAAATCACGATCATATATAAT 4214171 >seq4 Length=22154029 Score = 223 bits (246), Expect = 4e-53 Identities = 504/744 (68%), Gaps = 14/744 (2%) Strand=Plus/Plus Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720 || ||||| ||||||||| ||||| | || || || || |||||||| || || | Sbjct 3240315 ACGCCCATACGTTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCATCCAGC 3240374 Query 18721 GATATACAT-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA 18779 || || ||| ||||| || |||||||| || ||| || ||||| | || | Sbjct 3240375 GAGAT-CATCTCCATGAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAG 3240433 Query 18780 TTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCAT 18839 ||| | || || | |||||| ||||||| ||||||| | ||||| |||||||||| Sbjct 3240434 TTCCACCAGCAGACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAATTCAT 3240493 Query 18840 TCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC 18899 || || || || || || || |||||||| ||||| ||||| || || | || || || Sbjct 3240494 GCCAATCAAATTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATC 3240553 Query 18900 TGATATAATA--GATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATC 18957 || ||||| ||| || || | | | || | | | | ||| |||||| Sbjct 3240554 CGAGATAATCTCGATGATACGCTCCCGGC--TGGGCCGTTGCACCAAATGCCGGAACATC 3240611 Query 18958 AA-ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 | ||| ||||| |||||||| | |||||||| | ||||| ||||| || || || Sbjct 3240612 ATGACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGT 3240670 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076 | ||| |||||||| || | || || | ||| || || || ||||| ||| || Sbjct 3240671 CAGACCTGGCATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAA 3240730 Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATT 19136 ||| || || || || || ||||| || | | ||| || ||| | | || | || Sbjct 3240731 GAAGATTCCCTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCCTTCG- 3240789 Query 19137 ATGAA-TCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAG 19195 ||||| |||| || |||||||||||||| || ||| |||||||| || || | Sbjct 3240790 ATGAAATCCAAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGG 3240849 Query 19196 AATTAAATAGATACATACGCTCATCTGT--ATCTTTAACATATGCATCTATCAATAAACT 19253 ||| || ||||| || | || |||| ||| ||| ||||| ||| |||| | || Sbjct 3240850 CATTGAACAGATA-AT-CCCTTTGCTGTGGATCCCTAATATATGTATCGATCAGCACGCT 3240907 Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 |||||| || || || | ||| || || || || ||||| || || ||||| | ||||| Sbjct 3240908 GTACATCTCCGAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCTTC 3240967 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 ||||| || || || | || | ||||||| ||| |||||||| || ||||| Sbjct 3240968 GGTTATTTGCACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCGGA 3241027 Query 19374 AGCTGCAAAAAATGCTAATACATG 19397 || ||||| || || | ||||| Sbjct 3241028 GGCGGCAAAGAAGGCGAGCACATG 3241051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562052216722920