Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq2 466 2e-126
seq4 223 4e-53
>seq2
Length=4222574
Score = 466 bits (516), Expect = 2e-126
Identities = 1210/1855 (65%), Gaps = 10/1855 (1%)
Strand=Plus/Minus
Query 46980 ACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTCTTT 47039
||||| || | || | |||| ||||| |||||| || | ||||||||| || |||||
Sbjct 4216023 ACAGTGAATTGTATAGCATTAGCCGCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTA 4215964
Query 47040 AAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAA 47099
| |||| |||| ||| ||||| || |||||||| |||| ||||||| |
Sbjct 4215963 AGACCTGCTTTCCACGAATAAAAATGGATTGATGTTAATTTTCCATAATTAGGTTCAGCT 4215904
Query 47100 ATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCT 47159
| |||||||| | ||| ||||| ||||||||||| || ||||| ||||| ||||| | |
Sbjct 4215903 ACGTGAATATTGAAAGACTGACTTTGATCAATAAAGGCTCCTCTGTCAGCCGCCATTTTT 4215844
Query 47160 AAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGG 47219
| | | | || |||||||| ||||||||||| | | ||| || | ||
Sbjct 4215843 ATAGTTGATTTAATTGAAATCTCCCACACTGTTTTATACAAATCACGAATTTCCTTCGGA 4215784
Query 47220 A--GATT-AGTATTTTGAATAGATCCTCCgttttctataattttgttttttaattcattt 47276
| |||| | ||||||| || || || | ||| ||| |||| ||||| | || |
Sbjct 4215783 ATTGATTCAATATTTTGTATTGAACCACGATTTGATATTATTTGATTTTTCATCTCGTCA 4215724
Query 47277 gaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGAAATTCT 47336
||| | | |||| ||||| | | ||| | || || | |||||||||
Sbjct 4215723 TCCCACAAATCAAGTTCGGTTAAATCACGGAGTAAGTGATGGTTTACTACTTGAAATTCG 4215664
Query 47337 CCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTT 47396
|| || | ||||| | | || || || ||||| || || | || ||||| ||
Sbjct 4215663 CCGGACAATACTCGTCTTGTGTAAATGTTTGAAGTATAAGGCTCGAACGACTCATTGTTG 4215604
Query 47397 CCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACT 47456
|| | ||||| ||||| |||||||||||||||| ||||| | ||| |||||| ||
Sbjct 4215603 CCCATTATTTGTGCAGTAGATGCTGTAGGCATGGGAGCAACGAGTAAAGAATTTCTGACA 4215544
Query 47457 CCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACA 47516
|||| || |||| | ||| ||||||||||||| ||| |
Sbjct 4215543 CCATGTTGCGCTATCGATTTTTTAAGAACATCCCAGTCCCAAAGATCTGTTGGCGATTTA 4215484
Query 47517 TTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAA 47576
||||| | |||||| || | ||||||||| |||| ||| ||| ||| || | |||
Sbjct 4215483 TTCCACATATCATACTGCAAAATTCCTTTGCTTACTGGACTTCCAACATAAGTCTCATAT 4215424
Query 47577 GGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCA 47636
|| || | | || ||| | |||||| || ||||||| || | ||| ||||| |||||
Sbjct 4215423 GGTCCATCTCTTTGAGCTAATTCACAGCTGGCTTCCAGAGCTCCATAGTATATAGTTTCG 4215364
Query 47637 AATATTTTTATGTTTAGATTCCTTGCTTCTGATGA--TTCAAAAGGATANNNNNNNNNNN 47694
|| || | |||| | ||| || |||| ||| ||| |||
Sbjct 4215363 AAAATCTGCTGATTTAAAAGAAATGCATC--ATGACTTTCGTAAGAATACCGCATTAATA 4215306
Query 47695 NNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAA 47754
|| | || || || ||||| || ||||| ||||| || | || | ||| ||
Sbjct 4215305 TTAACGCGTCCGCAAACCCTTGGACTCCAATTCCAATAGGACGGTGGCGTAAATTTGATT 4215246
Query 47755 ACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNN 47814
| ||||||||| || || || | |||||||| || ||||| ||||
Sbjct 4215245 TTTTAGCTTCTGGCAAAGGGTAGTAATTTATATCAATTATTTTGTTTAAGTTTTTCGTAA 4215186
Query 47815 NNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAAC---TTGTTATTTATAACAAACC 47871
| |||| | | || ||||| ||| || || | || | ||||||
Sbjct 4215185 CAATTTTAGTTACTTCTTTAAGCTTTTTAAAGTCATACGATTTTTCATGCGTCACAAACA 4215126
Query 47872 TATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTA 47931
|||||||||| || || || | |||||| ||||||| |||| ||| | ||| | |
Sbjct 4215125 TATTAAGTGCAATTGACGCCAAATTACACACAGCTATTTCATCTGGTGCTGAATACTCAA 4215066
Query 47932 TTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNT 47991
|||||| | || ||||||| ||||| ||||| || | |||||| || || |
Sbjct 4215065 CTATTTCTGTGCACAGATTACTGCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTC 4215006
Query 47992 TGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGA 48051
||||||| | ||||| | | ||| | ||||| || || |||| |||||||| || |
Sbjct 4215005 TGTTACACGAATCCTTAAATAACATGTAGGGTGTACCCGTCTCTACTTGAGATTCGATAA 4214946
Query 48052 TAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATT 48111
| | ||||| || |||||| ||||| | ||| || ||||| ||||
Sbjct 4214945 TGGCAAACCAAAGAGATTGAGCCTTAATAACTCGATTCGCTCGTCCTTCTTGTTCATATT 4214886
Query 48112 TAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAG 48171
| |||| | || ||||| || || || | |||| | |||||||||| || |
Sbjct 4214885 TGATATAAAGGTTTTCAAAATCTTCACCCCAAACATCTGGAAGGCCAGGACATTTATGTG 4214826
Query 48172 GACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCC 48231
||||||| | ||||||||| |||| || || | ||||||| | ||| || ||||
Sbjct 4214825 GACACATTAGTGACCAATCTTCATTGGCTTCAACACGTTTCATAAAAAGATCAGGAATCC 4214766
Query 48232 AAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTT 48291
| | || | ||| | ||| | | | |||| || || ||| |||| ||||||| |
Sbjct 4214765 ACAATGCAAAAAACAGATCGCGCGCCCGATGTTCCTCCTTTCCAGTATTTTTTTTAAGGT 4214706
Query 48292 CAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTC 48351
| | ||| || | | ||| | ||||| || ||||| || || || | | | || ||||
Sbjct 4214705 CCAAAAATTCGAAGACATCTGAGTGCCAAGGCTCTAAGTAAATAGCAAATGCTCCAGGTC 4214646
Query 48352 GTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGA 48411
|||| ||| || ||||| | ||| | || ||| ||| |||||||||||||||| |
Sbjct 4214645 TTTTACCACCGCCCTGATCGACATAACGTGCCACATTATTAAAAACTCTTAACATTGGTA 4214586
Query 48412 CAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTAC 48471
| | |||||||| |||| || ||||| |||| | |||| |||||| |||
Sbjct 4214585 CTAATCCATTTGAAGTACCGTTCGTTCCACAAATTGATGTTCCTTTAGCTCGAATACAGT 4214526
Query 48472 TAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTAT 48531
|| | || || ||||||||| || || || | || || | | || | |
Sbjct 4214525 GAACATTCAGTCCAATGCCACCTGCCGACTTTGAAATCATTGCGCATTGCTCAACTGATT 4214466
Query 48532 CATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCG 48591
| |||| ||||| || |||| | ||| |||| ||||| || ||||| ||| |
Sbjct 4214465 TAAAAATCCCTTCAATTGAATCAGACACTATAGTTAAGAGAAAGCATGAAGACAATTGTG 4214406
Query 48592 GATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATA 48651
|| | || ||| | ||| | ||||| ||||||||| |||| | ||| ||||
Sbjct 4214405 GACGGTTTGTGGCTGCAGCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGATA 4214346
Query 48652 ACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACAC 48711
||| || || ||||| | ||||||| ||||| |||||||||||||| ||||
Sbjct 4214345 GCAAATTGTAGGTTTCCACTGCAGAATCAATATCTTCGCCATGTATACCTATAGCAACAC 4214286
Query 48712 GCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATT 48771
|||||| || || || |||||||| | ||||| ||||||||| | | || ||
Sbjct 4214285 GCATTAGCAAATGCTGTGGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAGTAAGACC 4214226
Query 48772 TTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826
|| | ||| ||||| ||||| ||||| ||| ||| || ||||| |||||
Sbjct 4214225 GCTCAAGTGTCTTAAATCCAAAGTAGTTATATCCAAAATCACGATCATATATAAT 4214171
>seq4
Length=22154029
Score = 223 bits (246), Expect = 4e-53
Identities = 504/744 (68%), Gaps = 14/744 (2%)
Strand=Plus/Plus
Query 18661 ACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAAT 18720
|| ||||| ||||||||| ||||| | || || || || |||||||| || || |
Sbjct 3240315 ACGCCCATACGTTGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCATCCAGC 3240374
Query 18721 GATATACAT-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA 18779
|| || ||| ||||| || |||||||| || ||| || ||||| | || |
Sbjct 3240375 GAGAT-CATCTCCATGAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAG 3240433
Query 18780 TTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCAT 18839
||| | || || | |||||| ||||||| ||||||| | ||||| ||||||||||
Sbjct 3240434 TTCCACCAGCAGACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAATTCAT 3240493
Query 18840 TCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC 18899
|| || || || || || || |||||||| ||||| ||||| || || | || || ||
Sbjct 3240494 GCCAATCAAATTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATC 3240553
Query 18900 TGATATAATA--GATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATC 18957
|| ||||| ||| || || | | | || | | | | ||| ||||||
Sbjct 3240554 CGAGATAATCTCGATGATACGCTCCCGGC--TGGGCCGTTGCACCAAATGCCGGAACATC 3240611
Query 18958 AA-ACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016
| ||| ||||| |||||||| | |||||||| | ||||| ||||| || || ||
Sbjct 3240612 ATGACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGT 3240670
Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076
| ||| |||||||| || | || || | ||| || || || ||||| ||| ||
Sbjct 3240671 CAGACCTGGCATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAA 3240730
Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATT 19136
||| || || || || || ||||| || | | ||| || ||| | | || | ||
Sbjct 3240731 GAAGATTCCCTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCCTTCG- 3240789
Query 19137 ATGAA-TCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAG 19195
||||| |||| || |||||||||||||| || ||| |||||||| || || |
Sbjct 3240790 ATGAAATCCAAGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGG 3240849
Query 19196 AATTAAATAGATACATACGCTCATCTGT--ATCTTTAACATATGCATCTATCAATAAACT 19253
||| || ||||| || | || |||| ||| ||| ||||| ||| |||| | ||
Sbjct 3240850 CATTGAACAGATA-AT-CCCTTTGCTGTGGATCCCTAATATATGTATCGATCAGCACGCT 3240907
Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313
|||||| || || || | ||| || || || || ||||| || || ||||| | |||||
Sbjct 3240908 GTACATCTCCGAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCTTC 3240967
Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373
||||| || || || | || | ||||||| ||| |||||||| || |||||
Sbjct 3240968 GGTTATTTGCACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCGGA 3241027
Query 19374 AGCTGCAAAAAATGCTAATACATG 19397
|| ||||| || || | |||||
Sbjct 3241028 GGCGGCAAAGAAGGCGAGCACATG 3241051
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562052216722920
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