Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 205 7e-47 seq2244 98.7 8e-15 seq3 98.7 8e-15 seq2049 91.5 1e-12 seq6343 89.7 4e-12 >seq1 Length=24697304 Score = 205 bits (226), Expect = 7e-47 Identities = 381/551 (69%), Gaps = 10/551 (2%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | ||||| ||||| || || || || ||| || ||||| | || |||| || Sbjct 8901640 AGCTGTTGGTATTGATTTGGGCACAACCTACTCTTGCGTGGGTGTGTTCCAGCATGGCAA 8901581 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||||| || |||||||| ||||| ||||| | || || |||||||||||| | ||||| Sbjct 8901580 GGTTGAGATCATTGCCAACGATCAGGGTAATCGTACCACCCCATCTTATGTTGCCTTCAC 8901521 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTAC 550167 ||| || || | ||| ||||||| || || || | || |||| || || || || Sbjct 8901520 GGAGACGGAGCGTTTGATTGGTGACGCCGCCAAGAACCAGGTGGCCA-TG--AACCCAAC 8901464 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 | | || || || |||||||| ||| | ||||| | | || ||||| || | || || Sbjct 8901463 CCAAACAATCTTCGATGCTAAGCGTCTGATTGGTCGCAAATTCGATGATGCGGCCGTGCA 8901404 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGA 550287 | | ||||||||||| ||||||||| | | || || ||| ||| || || | || || Sbjct 8901403 GTCTGATATGAAGCACTGGCCTTTCGAGGTCGTGAACGTTGATGGCAAGCCCAAGATCGA 8901344 Query 550288 AGCTACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTT 550346 | ||| | |||||| | || | ||| | || || | || || || ||||| | Sbjct 8901343 GGTTACGTA-CAAGGATGAGAAGAAGACTTTCTTCCCCGAGGAGATCTCCTCCATGGTGT 8901285 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTA 550405 | | || ||||| | || ||| | | | ||| ||||| ||||| |||| || Sbjct 8901284 TGACCAAGATGAAGGAGACCGCC-GAGGCGTACCTGGGCAAGACGGTTACCAATGCCGTC 8901226 Query 550406 ATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGT 550465 || ||||| || || ||||| || || ||||| ||||| || || || |||||||| Sbjct 8901225 ATCACTGTGCCCGCCTATTTCAACGATTCACAGCGTCAGGCAACCAAGGATGCTGGCACC 8901166 Query 550466 ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATAT 550525 || || || | || || | |||||||||||||| || ||||| || || | || ||| Sbjct 8901165 ATCGCCGGTTTGAACGTATTGCGTATTATCAATGAGCCAACTGCCGCGGCCATCGCCTAT 8901106 Query 550526 GGACTTGATAA 550536 || || || || Sbjct 8901105 GGCCTGGACAA 8901095 Score = 96.9 bits (106), Expect = 3e-14 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || ||||| ||| | || ||||| || || || ||||||||||| || |||| Sbjct 3429455 GCAATTGGTATCGATCTGGGCACCACCTACTCATGCGTGGGTGTTTGGCAGAACAATAAA 3429396 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 ||||| |||||||||||||||||||| || | || || || || ||||| | || | Sbjct 3429395 GTTGAGATTATTGCCAATGATCAAGGCAATCGGACGACGCCCTCGTATGTGGCCTTTAAC 3429336 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 || || || | || |||| |||||||| ||| |||| Sbjct 3429335 GACACAGAGCGCCTAATTGGCGATGCAGCTAAAAATCA 3429298 >seq2244 Length=2929 Score = 98.7 bits (108), Expect = 8e-15 Identities = 130/178 (73%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 930657 GTATTAATTGATTTTTCTTCACCAAATATTGCCAAAGAAATGCATATTGGACATTTGCGT 930716 |||||| |||| |||||||| ||||| || || ||| |||||||| | || || || ||| Sbjct 2360 GTATTAGTTGACTTTTCTTCTCCAAACATCGCAAAACAAATGCATGTCGGTCACTTACGT 2419 Query 930717 TCTACCATTATTGGAGAATCTTTATGTAGATTATATGAATATTGTGGAAG-TAAAGTTCA 930775 || ||||| ||||| || || | || || | ||||| || | || | | || Sbjct 2420 TCCACCATAATTGGGGAGTCAATCTGCAGGCTTCTTGAAT-TTCTACAACATGATGTAAT 2478 Query 930776 TCGAGTCAATCATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGCTTATATA 930833 ||| |||||||| | || ||||||||||| || ||||||||| | || ||| || || Sbjct 2479 TCGCATCAATCATCTCGGGGATTGGGGAACGCAGTTTGGTATGCTTATAGCTCATCTA 2536 >seq3 Length=21835025 Score = 98.7 bits (108), Expect = 8e-15 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| || ||||| ||||| ||| | ||| |||||||| |||| | ||| | Sbjct 1955075 AGACGGAGGACCAGATGGAGGGTCGACTCCTTCTGG--ATATTGTAGTCAGACAAAGTGC 1955018 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 |||||| ||||| || ||||| || || || | |||||||| || ||||| |||| Sbjct 1955017 GACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTT 1954958 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAG 563434 | ||||||||||| || || || |||||| ||||| | | | || || | Sbjct 1954957 CCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAGGG 1954898 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | | || || || || | |||||||||||| || ||||| Sbjct 1954897 TGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCAT 1954858 Score = 93.3 bits (102), Expect = 3e-13 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || || | |||||| ||| || || |||||||||||| | | || | Sbjct 1955477 AGACGTAGAACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGA 1955418 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| ||||| || ||||| || || || | |||||||| || ||||| ||||| Sbjct 1955417 CCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCC 1955358 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGT 563435 || || ||||| || || || |||||| ||||| | || | || || ||||| Sbjct 1955357 TTGTCCTGAATCTTAGCCTTCACGTTCTCAATGGTATC-GGATGGCTCCACCTCCAGAGT 1955299 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || || ||||| || || || ||||| ||||||||| Sbjct 1955298 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 1955259 >seq2049 Length=3215 Score = 91.5 bits (100), Expect = 1e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 931185 GTTAAATCTGATGGAGGATTTACATATGATACCTCTGATTTAGCAGCCATTAAATATAGA 931244 || ||||| ||||| ||||||||||| |||||||||||| | |||||||||| | || || Sbjct 2370 GTGAAATCGGATGGTGGATTTACATACGATACCTCTGATATGGCAGCCATTAGACATCGA 2311 Query 931245 TTTATGGAACAAAAAGTAGATCGTGTAATTTATGTTGTGGATTCAGGTCAAAG 931297 || ||| | || | | | ||||||||||||||||||| || ||||| Sbjct 2310 ATTGAAGAAGACAATGCCACTTGGATAATTTATGTTGTGGATTCTGGACAAAG 2258 >seq6343 Length=1211 Score = 89.7 bits (98), Expect = 4e-12 Identities = 102/136 (75%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456 || || || || ||||| || || || || ||||||||||| |||||||| || ||||| Sbjct 995 GACGCCGTCATCACTGTGCCTGCCTACTTCAATGACTCACAGCGTCAAGCAACCAAAGAC 936 Query 550457 GCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCA 550516 ||||| || || || || || || || || || |||||||| || ||||| || || Sbjct 935 GCTGGTGCCATCGCCGGGCTGAACGTGCTGCGCATCATCAATGAGCCCACTGCAGCCGCT 876 Query 550517 CTTGCATATGGACTTG 550532 || || ||||| |||| Sbjct 875 CTGGCCTATGG-CTTG 861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028870121040970