Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3 123 2e-23 seq4 116 3e-21 >seq3 Length=21835025 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||||| ||| |||||||| ||||| || || || ||||||||||||| | || | | Sbjct 1955475 ACGTAGAACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGACC 1955416 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| |||||| || || || |||| |||||| ||||| || ||||||||||| || Sbjct 1955415 ATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTT 1955356 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || ||||| || || || | || | || || || | ||||| || ||||||| Sbjct 1955355 GTCCTGAATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCCACCTCCAGAGTGAT 1955296 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || | || || || || || ||||| Sbjct 1955295 GGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1955260 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| ||||| || || || || |||||||| || | | ||| | |||| |||| ||| Sbjct 1955061 ATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAAGTGCGACCATCTTCCAGTTG 1955002 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || |||| |||||| ||||| || ||||||||||| ||||||||||| || Sbjct 1955001 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTATCTTGAATCTT 1954942 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || || | || | || || || | || || || || |||| || || || || Sbjct 1954941 GGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAGGGTGATGGTCTTTCCCGT 1954882 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 |||||||| || || |||||||| Sbjct 1954881 CAAAGTTTTAACGAAGATCTGCAT 1954858 >seq4 Length=22154029 Score = 116 bits (128), Expect = 3e-21 Identities = 199/287 (69%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 13651 ATTGAATTTTCGTTTACAACCTTCAAAATTCATGTGTCGTATTTTACCATAGATTGGTCG 13710 || ||| || || || || |||| | | ||||| | || || ||||| | || | || Sbjct 611991 ATCGAACTTGCGCTTGCAGCCTTGATAGTTCATATAGCGAATCTTACCGAATATCGCGCG 611932 Query 13711 CTCCATCCAGGCACGATCGTGAGTTCCGCATATTGACCACATGCAACCGGCATAACCGTT 13770 ||| ||||| | | |||||| | || | || |||||||||||||| | || || || Sbjct 611931 TTCCTTCCAGCCTTGGTCGTGAATGCCACCGATGGACCACATGCAACCAACGTAGCCATT 611872 Query 13771 GGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGCGTTGATTAAAGCCAC 13830 |||||||| ||||||| |||||| || ||||| || |||| | | | ||| | Sbjct 611871 CGGATCGCGCCCATCCAGACTGTACTTATCGTTCAATAGTATG--CTATACTCTAGCGCC 611814 Query 13831 TG--TAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCTCATATATCCG 13888 || |||| | ||||||||| || ||||| |||||||| || | || | ||| Sbjct 611813 TGCTCCGGCGTTTCGGTCCATTCTAAAATCTTTTTGGCCCAATACATGCGCAAGAAACCG 611754 Query 13889 TGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAA 13935 ||||||||||| | | | |||||| ||| || | ||||||||| Sbjct 611753 TGCATTTTGCCCTCCTTCACCAGCTGTAGCTGGGCCGAGTTCCACAA 611707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396239506884921