Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq4 174 3e-38 >seq4 Length=22154029 Score = 174 bits (192), Expect = 3e-38 Identities = 539/824 (65%), Gaps = 15/824 (2%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 || || || || ||| | ||||| || ||||| || || || |||| |||||| ||||| Sbjct 3240327 TGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCATCCAGCGAGATCATCTCC 3240386 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCC-ATCTGTTCCAGCAG 47958 |||||| ||| || || || || || | || || || | | ||||||| Sbjct 3240387 ATGAAGGTGAATGGATTCTTCGTATTGTAGATTT-TGCCAACACCGAGTTCCACCAGCAG 3240445 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 ||||||| || | || || |||| ||||| | | |||||||| || | Sbjct 3240446 ACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAATTCATGCCAATCAAATT 3240505 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT- 48077 ||||||| ||| | |||||||||||| | ||| || || || ||| | ||||| Sbjct 3240506 GACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCCGAGATAATCTC 3240565 Query 48078 GCTTA-ACGCGGGACTCTGAGGGTTTGTTGCGC-AGGTGCTTGGCATAGAGCATGCAGGC 48135 | | | |||| | | | || ||||| | | ||| | | | |||| || Sbjct 3240566 GATGATACGCT---CCCGGCTGGGCCGTTGCACCAAATGCCGGA---ACATCATGACAGC 3240619 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| | |||||||| ||||| || ||| | | | |||||||| ||||| || Sbjct 3240620 AAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGTCAGACCTGG 3240679 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || | || || ||||| || || | || || || ||||||||| || Sbjct 3240680 CATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAAGAAGATTCC 3240739 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 |||||| || || |||||| | | ||||| || || || ||| ||| ||||| Sbjct 3240740 CTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCCTTCGATGAAATCCA 3240799 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 || |||||||| || ||||| ||||| ||||| || || ||||| ||| || Sbjct 3240800 AGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAG 3240859 Query 48376 CTTCTTGCACTCACCTGCG--TCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 | | | || ||| | ||| || ||| ||| || |||| ||||||||| Sbjct 3240860 ATAAT--CCCTTTGCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCC 3240917 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 |||||||||||||| || || || || || || ||||| | || || | ||| Sbjct 3240918 GAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGC 3240977 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || | ||| | ||| | |||||||||||| || || ||||| || || |||||| Sbjct 3240978 ACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCGGAGGCGGCAAAG 3241037 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGT 48613 ||||| || ||||| | || || |||||||| | || | | |||| || Sbjct 3241038 AAGGCGAGCACATGCGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCCGCC 3241097 Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | || ||| || ||||| || |||||||||||||| || || Sbjct 3241098 AAATCCTTGGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGC 3241141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931439029579520