Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09]
8,053 sequences; 115,885,644 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq4 174 3e-38
>seq4
Length=22154029
Score = 174 bits (192), Expect = 3e-38
Identities = 539/824 (65%), Gaps = 15/824 (2%)
Strand=Plus/Plus
Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899
|| || || || ||| | ||||| || ||||| || || || |||| |||||| |||||
Sbjct 3240327 TGATATTCTCCAACTTTCTTCTCGAAAAAGTTAGTTTTGCCATCCAGCGAGATCATCTCC 3240386
Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCC-ATCTGTTCCAGCAG 47958
|||||| ||| || || || || || | || || || | | |||||||
Sbjct 3240387 ATGAAGGTGAATGGATTCTTCGTATTGTAGATTT-TGCCAACACCGAGTTCCACCAGCAG 3240445
Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018
||||||| || | || || |||| ||||| | | |||||||| || |
Sbjct 3240446 ACGATCCGCCACAAATTCAATATATTGGGACATCAATGCACAATTCATGCCAATCAAATT 3240505
Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT- 48077
||||||| ||| | |||||||||||| | ||| || || || ||| | |||||
Sbjct 3240506 GACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCCGAGATAATCTC 3240565
Query 48078 GCTTA-ACGCGGGACTCTGAGGGTTTGTTGCGC-AGGTGCTTGGCATAGAGCATGCAGGC 48135
| | | |||| | | | || ||||| | | ||| | | | |||| ||
Sbjct 3240566 GATGATACGCT---CCCGGCTGGGCCGTTGCACCAAATGCCGGA---ACATCATGACAGC 3240619
Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195
|||||| | |||||||| ||||| || ||| | | | |||||||| ||||| ||
Sbjct 3240620 AAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAACGTCAGACCTGG 3240679
Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255
||| | || | || || ||||| || || | || || || ||||||||| ||
Sbjct 3240680 CATCAGACCACGCTTCTTCAGCCAAAAGATCGAGGCAAAGCTTCCGCTGAAGAAGATTCC 3240739
Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315
|||||| || || |||||| | | ||||| || || || ||| ||| |||||
Sbjct 3240740 CTCCACGGCAGCAAACGCGATAATTCTCTCGCCAAAGTTCGCCGCCTTCGATGAAATCCA 3240799
Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375
|| |||||||| || ||||| ||||| ||||| || || ||||| ||| ||
Sbjct 3240800 AGAGAGCGCCCAATCAGCCTTTCGCTTGACAGCGGGCATTGTTTCAATGGCATTGAACAG 3240859
Query 48376 CTTCTTGCACTCACCTGCG--TCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433
| | | || ||| | ||| || ||| ||| || |||| |||||||||
Sbjct 3240860 ATAAT--CCCTTTGCTGTGGATCCCTAATATATGTATCGATCAGCACGCTGTACATCTCC 3240917
Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493
|||||||||||||| || || || || || || ||||| | || || | |||
Sbjct 3240918 GAGTGCACATTCTCCATGGCAATTTGAAAGCCATAGAAACAACGAGCTTCGGTTATTTGC 3240977
Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553
|| || | ||| | ||| | |||||||||||| || || ||||| || || ||||||
Sbjct 3240978 ACCTCCTGGCTGAAGCGCTCGACCAGATTCTCATTAACAATGCCATCGGAGGCGGCAAAG 3241037
Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGT 48613
||||| || ||||| | || || |||||||| | || | | |||| ||
Sbjct 3241038 AAGGCGAGCACATGCGAGATAAAGTGACGCTCGTTATCAGTTAAACGTGCCCAGTCCGCC 3241097
Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657
| || ||| || ||||| || |||||||||||||| || ||
Sbjct 3241098 AAATCCTTGGAGAGATCCACCTCCTCCACAGTCCAGAATGAGGC 3241141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931439029579520
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