Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4 118 2e-21 >seq4 Length=22154029 Score = 118 bits (130), Expect = 2e-21 Identities = 348/526 (66%), Gaps = 8/526 (2%) Strand=Plus/Minus Query 25506 CTCAAACTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGT-ACGCTC 25564 |||| |||||| | || ||| | ||||| ||||||| ||| | |||| ||| | Sbjct 3241139 CTCATTCTGGACTGTGGAGGAGGTGGATCTCTCCAAGGATTTGGCGGACTGGGCACGTT- 3241081 Query 25565 TATCCAAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATG 25624 || | | |||||| || ||| || | | ||| | || |||||||| ||||| |||| Sbjct 3241080 TAACTGATAACGAGCGTCACTTTATCTCGCATGTGCTCGCCTTCTTTGCCGCCTCCGATG 3241021 Query 25625 GTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCA 25684 | || || || ||||||||| |||| | |||| | ||| ||||| || || Sbjct 3241020 GCATTGTTAATGAGAATCTGGTCGAGCGCTTCAGCCAGGAGGTGCAAATAACCGAAGCTC 3240961 Query 25685 AGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGC 25744 |||||||| || || || || ||||| || ||||||||||| ||| |||| | || Sbjct 3240960 GTTGTTTCTATGGCTTTCAAATTGCCATGGAGAATGTGCACTCGGAGATGTACAGCGTGC 3240901 Query 25745 TTCT-GATGACGTACATTACAGA-CGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGA 25802 | | ||| || || |||| || | | | | || ||| ||||| |||||| || Sbjct 3240900 TGATCGAT-ACATATATTAGGGATCCACAGC-AAAGGGATTATCTGTTCAATGCCATTGA 3240843 Query 25803 GCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAG 25862 || ||| ||||| | ||||| ||||| | ||||| || | | | Sbjct 3240842 AACAATGCCCGCTGTCAAGCGAAAGGCTGATTGGGCGCTCTCTTGGAT-TTCATCGAAGG 3240784 Query 25863 C-GCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCG 25921 | || | ||||||||| | | | || |||||||| |||||||| ||||| ||||||| Sbjct 3240783 CGGCGAACTTTGGCGAGAGAATTATCGCGTTTGCTGCCGTGGAGGGAATCTTCTTCAGCG 3240724 Query 25922 GTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTT 25981 | ||||| | ||||| ||||| ||| || || ||||| || ||| || | Sbjct 3240723 GAAGCTTTGCCTCGATCTTTTGGCTGAAGAAGCGTGGTCTGATGCCAGGTCTGACGTTCT 3240664 Query 25982 CCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGC 26027 |||| ||| | ||| | |||||||| | || | || ||||| Sbjct 3240663 CCAATGAGTTGATCTCACGCGACGAGGGCTTGCATTGTGACTTTGC 3240618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928751300160320