Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20navojoa_20[refseq_20GCF_5F001654015.1_202016-05-09] 8,053 sequences; 115,885,644 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1 197 9e-45 seq3 93.3 3e-13 seq2 93.3 3e-13 >seq1 Length=24697304 Score = 197 bits (218), Expect = 9e-45 Identities = 378/548 (69%), Gaps = 8/548 (1%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| ||| || | ||| | || |||| || || | Sbjct 8901635 TTGGTATTGATTTGGGCACAACCTACTCTTGCGTGGGTGTGTTCCAGCATGGCAAGGTTG 8901576 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || |||||||| || || |||||| | || || ||||| |||||| | || || || | Sbjct 8901575 AGATCATTGCCAACGATCAGGGTAATCGTACCACCCCATCTTATGTTGCCTTCACGGAGA 8901516 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | | | ||||| || || || || | || | || || || | || | Sbjct 8901515 CGGAGCGTTTGATTGGTGACGCCGCCAAGAACCAGGTGGCCATGAACCCAACCCAAACAA 8901456 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || |||||||| | |||||||||| || || |||||| | | || || ||||||| Sbjct 8901455 TCTTCGATGCTAAGCGTCTGATTGGTCGCAAATTCGATGATGCGGCCGTGCAGTCTGATA 8901396 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || |||||||| |||| | || |||| ||| || || | || || | | | Sbjct 8901395 TGAAGCACTGGCCTTTCGAGGTCGTGAACGTTGATGGCAAGCCCAAGATCGAGGTTACGT 8901336 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| || |||| Sbjct 8901335 ACAAGGATGAG-AAGAAGACTTTCTTC-CCCGAGGAGATCTCCTCCATGGTGTTGACCAA 8901278 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 ||||| | |||| |||| | || | ||| ||||| || || |||| || || ||| Sbjct 8901277 GATGAAGGAGACCGCCGAG-GCGTA-CCTGGGCAAGACGGTTACCAATGCCGTCATCACT 8901220 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || ||||| || ||||| || ||||| ||||| || ||||| || | || || Sbjct 8901219 GTGCCCGCCTATTTCAACGATTCACAGCGTCAGGCAACCAAGGATGCTGGCACCATCGCC 8901160 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||| | || || || |||||||| ||||| ||||| || || || | || ||||| || Sbjct 8901159 GGTTTGAACGTATTGCGTATTATCAATGAGCCAACTGCCGCGGCCATCGCCTATGGCCTG 8901100 Query 474869 GATAAGAA 474876 || ||||| Sbjct 8901099 GACAAGAA 8901092 Score = 100 bits (110), Expect = 2e-15 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||||||||||| ||| | || || || ||| || || | ||||||||| || |||| Sbjct 3429455 GCAATTGGTATCGATCTGGGCACCACCTACTCATGCGTGGGTGTTTGGCAGAACAATAAA 3429396 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || ||||||||||| ||||| ||| | || || || || ||||| | |||| Sbjct 3429395 GTTGAGATTATTGCCAATGATCAAGGCAATCGGACGACGCCCTCGTATGTGGCCTTTAAC 3429336 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCA 474486 || || || | || ||||| ||||| |||||| |||| Sbjct 3429335 GACACAGAGCGCCTAATTGGCGATGCAGCTAAAAATCA 3429298 >seq3 Length=21835025 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || ||||| || || || || | ||| || |||| | ||| Sbjct 1955079 ACGCAGACGGAGGACCAGATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGACAAAGT 1955020 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| |||||||| || || || || ||||| || ||||| || ||||| || Sbjct 1955019 GCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCC 1954960 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||| ||||||||||| ||||| ||||| ||||| | | | || || Sbjct 1954959 TTCCTTATCTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAACCTCCAG 1954900 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || || | ||| |||||||| || || Sbjct 1954899 GGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTG 1954861 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || | |||||| ||| || || || ||| ||||| | | || Sbjct 1955481 ACGCAGACGTAGAACCAAATGAAGAGTAGACTCCTTCTGAATATTGTAATCGGACAAGGT 1955422 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | |||||| |||||||| || || || || ||||| || ||||| || ||||| || Sbjct 1955421 GCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCC 1955362 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| |||||||| || || ||||| ||||| | || | | || | Sbjct 1955361 TTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCAATGGTATCGGATGGCTCCA-CCTCCA 1955303 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || || || ||||| ||||| ||||| Sbjct 1955302 GAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTG 1955263 >seq2 Length=4222574 Score = 93.3 bits (102), Expect = 3e-13 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATG--AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 ||| |||||||| || | || ||||| ||| ||| ||| || || || | |||| Sbjct 180290 ACGCAGACGGAGCACTAAGTGCAAAGTGGACTC-CTTCTGAATG-TTGTAGTCGGATAGA 180233 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | ||| || || ||||| || ||||| || ||||| || ||||| || || || Sbjct 180232 GTGCGTCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGTGGGATC 180173 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTC 480727 ||||| ||||| || ||||| |||||| || || || |||| | | | | | | Sbjct 180172 CCTTCTTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCC 180113 Query 480728 AAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| |||| || || ||||||||||| || ||||| ||||| Sbjct 180112 AAGG-TAATGGTCTTGCCGGTGAGAGTTTTMACGAAGATTTG 180072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267833767756844